spack/var/spack/repos/builtin/packages
2018-10-10 14:06:51 +02:00
..
abinit
abyss Abyss: added variant maxk (#9280) 2018-10-02 17:27:25 -07:00
accfft
ack
activeharmony
adept-utils
adios
adios2
adlbx
adol-c
aegean
aida New package: AIDA (#9094) 2018-09-03 21:02:06 -05:00
albany
albert
alglib install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
allinea-forge
allinea-reports
allpaths-lg
alquimia
alsa-lib
amg AMG: update version (#9228) 2018-09-12 14:11:05 -06:00
amg2013
amp
ampliconnoise
amrex xsdk: add slepc and amrex [and handle clang conflict wrt amrex] (#8932) 2018-08-13 22:17:17 -07:00
amrvis Updating amrvis to allow building with profiling support. (#9204) 2018-09-14 17:16:35 -07:00
andi
angsd
ant ant: add tested 1.10.0, switch build target (#9358) 2018-10-08 17:09:56 -05:00
antlr
ants
ape
aperture-photometry aperture-photometry: new package (#9119) 2018-09-03 20:52:11 -05:00
apex
apple-libunwind apple-libunwind: update path to library (#9265) 2018-09-18 18:48:53 -07:00
applewmproto
appres
apr
apr-util
aragorn
archer
argobots argobots: new package starting at 1.0b1 (#9238) 2018-09-14 15:48:40 -07:00
argp-standalone
argtable
arlecore install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
armadillo
arpack-ng arpack-ng: add version 3.6.3 (#9331) 2018-09-26 19:12:41 -07:00
arrow
ascent
asciidoc
aspa
aspcud
aspect aspect: new version (#9146) 2018-09-03 20:35:45 -05:00
aspell
aspell6-de Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
aspell6-en Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
aspell6-es Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
aspera-cli
assimp assimp: fix compile issues with intel compilers on knl/linux [a depen… (#9191) 2018-09-08 16:18:37 -05:00
astra
astral
astyle
at-spi2-atk Packages/atk (#9002) 2018-08-16 18:11:52 -05:00
at-spi2-core Packages/atk (#9002) 2018-08-16 18:11:52 -05:00
atk atk package: hotfix #9099 (#9102) 2018-08-28 16:35:30 -04:00
atlas
atom-dft install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
atompaw
atop
augustus
autoconf Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
autodock-vina install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
autofact Autofact: new package (#9317) 2018-10-09 12:26:46 -05:00
autogen Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
automaded
automake Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
axel
axl
bamdst Bamdst: a new package. (#9113) 2018-09-04 14:35:33 -05:00
bamtools
bamutil
barrnap
bash Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
bash-completion
bats
bazel Bazel: update env handling, add versions (#9369) 2018-09-27 19:37:31 -07:00
bbcp
bbmap
bc Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
bcftools
bcl2fastq2 install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
bdftopcf
bdw-gc
bear
beast1
beast2
bedops
bedtools2
beforelight
benchmark
berkeley-db
bertini
bib2xhtml
bigreqsproto
binutils binutils: add variant 'nls' for native language support (#9124) 2018-08-29 20:32:41 -07:00
bioawk install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
biopieces install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
bismark
bison bison: add new version (#9085) 2018-08-23 17:00:26 -05:00
bitmap
blasr
blasr-libcpp
blast-plus blastplus: newest version 2.7.1 (#9472) 2018-10-09 13:22:34 -07:00
blat
blaze
blis Add blis package (#8925) 2018-08-16 11:26:43 -05:00
bliss
blitz
bmake
bml
bohrium Update bohrium version (#9020) 2018-08-18 09:22:16 -05:00
bolt bolt: new package starting at 1.0b1 (#9253) 2018-09-14 15:49:36 -07:00
bookleaf-cpp
boost
boostmplcartesianproduct
bowtie
bowtie2
boxlib
bpp-core
bpp-phyl
bpp-seq
bpp-suite
bracken
braker braker: add missing deps (#9468) 2018-10-09 16:55:28 -07:00
branson
breakdancer breakdancer: fix several issues (#9251) 2018-09-14 20:11:34 -07:00
breseq
brigand
bsseeker2
bucky
bumpversion
busco
butter
bwa
bwtool
byobu
bzip2 Change bzip2 download URL (#8976) 2018-08-14 10:46:15 -06:00
c-blosc
c-lime
caffe
cairo
cairomm
caliper
callpath
camellia
candle-benchmarks Removed gtk dependency from Candle (#9451) 2018-10-09 11:38:54 -06:00
cantera
canu Canu-Updated to lastest version:1.7.1 (#9413) 2018-10-05 10:56:03 -05:00
cap3
cares
cask
casper install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
catalyst Catalyst Package: made Python mandatory at build time (#9432) 2018-10-08 09:10:03 +02:00
catch Catch2: 2.3.0+ (#9300) 2018-09-20 15:55:18 +02:00
cbench
cblas CBLAS: Don't hardcode BLAS library name (#9017) 2018-08-18 11:19:24 -05:00
cbtf Update openspeedshop and cbtf version numbers (#9150) 2018-09-03 20:35:25 -05:00
cbtf-argonavis Update openspeedshop and cbtf version numbers (#9150) 2018-09-03 20:35:25 -05:00
cbtf-argonavis-gui qtgraph and cbtf-argonavis create proper library paths in modules (#8797) 2018-08-17 15:58:08 -07:00
cbtf-krell Update openspeedshop and cbtf version numbers (#9150) 2018-09-03 20:35:25 -05:00
cbtf-lanl Update openspeedshop and cbtf version numbers (#9150) 2018-09-03 20:35:25 -05:00
ccache
cctools
cdbfasta
cdd
cddlib
cdhit
cdo add cdo releases 1.9.4 and 1.9.5 (#9079) 2018-08-23 10:27:35 -05:00
ceed
cereal
ceres-solver
cfitsio
cgal
cgm
cgns
channelflow New package: channelflow (#9111) 2018-08-29 10:54:34 +02:00
charliecloud add Charliecloud 0.9.2 and 0.9.3 (#9441) 2018-10-05 11:16:07 +02:00
charmpp Charmpp: rename charm to charmpp according to ++ conventions (#9216) 2018-09-14 17:01:07 -07:00
chatterbug chatterbug: new spack package (#8994) 2018-08-18 16:18:50 -07:00
check
chlorop install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
chombo install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
cistem Fix version parsing for cistem package (#9260) 2018-09-18 19:29:18 -07:00
cityhash
clamr
clapack Fix missing makefile variable in clapack package (#9016) 2018-08-18 11:19:40 -05:00
claw CLAW Compiler: Add Spack Package (#9405) 2018-10-03 17:17:13 +02:00
cleaveland4
cleverleaf
clfft
clhep Add new CLHEP releases and move to sha256 hashes (#9089) 2018-08-24 09:49:38 -05:00
clingo
cloc
cloog
cloverleaf
cloverleaf3d
clustalo
clustalw
cmake cmake: add version 3.12.2 (#9248) 2018-09-14 09:36:39 -07:00
cmocka
cmor
cnmem
cnpy
cntk
cntk1bitsgd
codar-cheetah install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
codes New package: CODES simulation framework (#9133) 2018-09-03 20:43:50 -05:00
coevp
cohmm
coinhsl coinhsl: add @2015.06.23, explain versions, SHA256 (#9258) 2018-09-16 15:03:26 -05:00
colm
colordiff
comd ecp-proxy-apps: update dependencies for release 1.0 and 1.1 (#9217) 2018-09-11 15:10:49 -06:00
commons-lang Add MDB driver support to GDAL (#8614) 2018-08-29 12:35:56 -05:00
commons-lang3 Add MDB driver support to GDAL (#8614) 2018-08-29 12:35:56 -05:00
commons-logging Add MDB driver support to GDAL (#8614) 2018-08-29 12:35:56 -05:00
compiz
compositeproto
conduit
constype
converge
coreutils Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
corset
cosmomc
cosp2 install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
cp2k install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
cppad
cppcheck install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
cppgsl new package: GSL - C++ Guideline Support Library (#9091) 2018-08-24 17:45:18 -04:00
cpprestsdk
cppunit
cppzmq
cpu-features
cpuinfo
cram
cryptopp
cscope
csdp
ctffind
cub
cube
cubelib scorep: make optional packages variants (#9011) 2018-08-18 11:25:05 -05:00
cubew scorep: make optional packages variants (#9011) 2018-08-18 11:25:05 -05:00
cuda Added Cuda 10 (#9310) 2018-09-27 13:33:53 -07:00
cuda-memtest
cudnn Added cudnn 7.3 (#9400) 2018-10-02 17:24:13 -07:00
cufflinks
cups
curl
cvs Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
czmq
dakota
daligner
damageproto
damselfly
darshan-runtime
darshan-util
dash
datamash Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
dataspaces
davix Davix version update (#9304) 2018-10-04 16:12:53 -07:00
dbus Add version 1.12.8 to dbus (#8949) 2018-08-11 09:21:20 -05:00
dealii xsdk: add dealii (#7529) 2018-09-06 19:22:17 -05:00
dealii-parameter-gui
deconseq-standalone
dejagnu Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
delly2
denovogear
dia
dialign-tx
diamond
diffsplice
direnv
discovar
discovardenovo
dislin
dlpack
dmd Pack dlang's stdlib into dmd. (#9131) 2018-09-04 14:49:28 -05:00
dmlc-core
dmtcp
dmxproto
docbook-xml
docbook-xsl
dos2unix
dotnet-core-sdk changed to new install_tree formalism (#9181) 2018-09-15 09:40:50 -05:00
double-conversion
doxygen
dri2proto
dri3proto
dsdp
dsrc
dtcmp
dyninst dyninst: add dependency on libiberty (#8806) 2018-08-27 14:34:05 -07:00
ea-utils
easybuild
ebms
eccodes
eclipse-gcj-parser
ecp-proxy-apps [WIP] Release 2.0 of the ECP Proxy Apps suite (#9368) 2018-10-02 16:35:41 -06:00
ed Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
editres
eigen add eigen@3.3.5 (#9212) 2018-09-14 17:14:46 -07:00
elasticsearch Added Kibana package, added Elasticsearch to 6.4.0 (#9239) 2018-09-14 10:50:20 -07:00
elemental
elfutils
elk
elpa
emacs Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
ember ember: put all READMEs into docs and add executables in bin (#9362) 2018-09-27 05:49:15 -06:00
emboss
encodings
energyplus energyplus: new package starting at 8.9.0 (#9262) 2018-10-09 08:45:13 -05:00
environment-modules
eospac
er
es
esmf
essl
ethminer
etsf-io
everytrace
everytrace-example
evieext
exabayes
examinimd [WIP] Release 2.0 of the ECP Proxy Apps suite (#9368) 2018-10-02 16:35:41 -06:00
exampm
exasp2
exmcutils
exodusii
exonerate
expat
expect
express
extrae
exuberant-ctags
f90cache
fabtests
falcon
farmhash install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
fast-gbs
fast-global-file-status
fasta Add package for fasta (#8953) 2018-08-11 11:38:31 -05:00
fastjar
fastmath
fastme
fastphase
fastq-screen
fastqc install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
fastqvalidator
fasttree
fastx-toolkit
fenics
fermi
fermikit
fermisciencetools install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
ferret
ffmpeg
fftw
figtree figtree: new package starting at 1.4.3 (#9359) 2018-10-08 16:00:21 -05:00
fimpute
findutils Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
fio
fish
fixesproto
flac
flang
flann patch flann // gcc // cmake@3.11+ (#9214) 2018-09-14 17:01:58 -07:00
flash
flatbuffers
flecsale
flecsi flecsi: fix build (#9129) 2018-08-29 09:23:02 -06:00
flex
flint
flit
fltk
flux-core
flux-sched
fluxbox
fmt
foam-extend install_tree: symlink handling and add 'ignore' option (#9019) 2018-08-17 22:08:38 -04:00
folly
font-adobe-75dpi
font-adobe-100dpi
font-adobe-utopia-75dpi
font-adobe-utopia-100dpi
font-adobe-utopia-type1
font-alias
font-arabic-misc
font-bh-75dpi
font-bh-100dpi
font-bh-lucidatypewriter-75dpi
font-bh-lucidatypewriter-100dpi
font-bh-ttf
font-bh-type1
font-bitstream-75dpi
font-bitstream-100dpi
font-bitstream-speedo
font-bitstream-type1
font-cronyx-cyrillic
font-cursor-misc
font-daewoo-misc
font-dec-misc
font-ibm-type1
font-isas-misc
font-jis-misc
font-micro-misc
font-misc-cyrillic
font-misc-ethiopic
font-misc-meltho
font-misc-misc
font-mutt-misc
font-schumacher-misc
font-screen-cyrillic
font-sony-misc
font-sun-misc
font-util
font-winitzki-cyrillic
font-xfree86-type1
fontcacheproto
fontconfig
fontsproto
fonttosfnt
fp16
fpc
fr-hit
freebayes
freeglut
freetype
fseq
fsl install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
fslsfonts
fstobdf
ftgl
funhpc
fyba
gapbs
gapcloser
gapfiller Gapfiller 1.10 f01 (#9163) 2018-09-28 14:45:54 -05:00
gasnet gasnet:version bump (#9127) 2018-08-29 06:48:52 +02:00
gatk gatk: new version (#9202) 2018-09-14 13:55:52 -07:00
gaussian install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
gawk Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
gblocks
gcc Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
gccmakedep
gccxml
gconf
gcta
gdal GDAL: add version 2.3.1 (#9156) 2018-09-01 07:32:24 -05:00
gdb gdb: add lzma support by default (#9247) 2018-09-15 09:06:16 -05:00
gdbm Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
gdk-pixbuf
gdl
geant4 Add important variants to MOAB and Geant4 (#9409) 2018-10-09 17:05:49 -07:00
gearshifft
gemmlowp
genemark-et
genomefinisher install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
genometools
geopm
geos
gettext Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
gflags
ghost
ghostscript
ghostscript-fonts
giflib
git install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
git-imerge
git-lfs
gl2ps
glew
glfmultiples
glib glib: Add 2.56.2 (#9071) 2018-08-22 14:21:54 -05:00
glibmm
glimmer
glm
global
globalarrays
globus-toolkit
glog
gloo
glpk Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
glproto
glvis
gmake Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
gmap-gsnap gsnap: add 2018-07-04 (#9356) 2018-09-28 17:07:08 -05:00
gmime
gmodel gmodel: new package starting at 2.1.0 (#9170) 2018-09-06 10:48:08 +02:00
gmp Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
gmsh gmsh: add git master and 4.0.0 versions (#9172) 2018-09-06 10:42:40 +02:00
gnat
gnu-prolog
gnupg
gnuplot
gnutls
go go: Update to 1.11 (#9101) 2018-08-29 07:00:40 +02:00
go-bootstrap install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
gobject-introspection
googletest
gotcha
gource
gperf Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
gperftools gperftools@2.7: new version; homepage, URL, hash updates (#9010) 2018-08-16 19:38:02 -05:00
gplates
grackle install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
gradle install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
grandr
graph500
graphicsmagick
graphlib
graphmap
graphviz
grass grass improvement: specify proj data directory (#8984) 2018-08-15 09:54:08 -05:00
grib-api
grnboost
groff Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
gromacs Add version 5.1.5 for gromacs. (#8948) 2018-08-11 09:21:32 -05:00
gsl Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
gslib
gtkmm
gtkorvo-atl
gtkorvo-cercs-env
gtkorvo-dill
gtkorvo-enet
gtkplus
gts
guidance
guile Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
gurobi install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
h5hut
h5part
h5utils
h5z-zfp
hacckernels
hadoop hadoop package: fix url and checksum (#9263) 2018-09-18 18:49:52 -07:00
halc
hapcut2
hapdip
haploview
harfbuzz
harminv
hdf
hdf5 hdf5@1.10.3: new version (#9121) 2018-08-29 10:58:24 +02:00
hdf5-blosc install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
help2man Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
hepmc
heppdt
hic-pro
highfive
highwayhash
hiop Make builtin flag handlers available in package scope (#8668) 2018-10-09 15:18:31 -07:00
hisat2
hisea
hmmer
hoomd-blue
hpccg
hpctoolkit
hpctoolkit-externals
hpgmg
hpl
hpx
hpx5
hsakmt
hstr
htop htop: add version 2.2.0 (#9086) 2018-08-23 18:50:01 -05:00
htslib Add samtools 1.9 (#8961) 2018-08-12 18:54:50 -05:00
httpie
hub
hunspell
hwloc Hwloc add update 2.0.2 (#9244) 2018-09-14 10:48:38 -07:00
hybpiper
hydra
hydrogen
hypre Update HYPRE with version 2.15.0. (#9443) 2018-10-08 08:58:02 +02:00
i3
ibmisc
iceauth
icedtea Java updates: new versions, classpath, and JAVA_HOME (#8613) 2018-08-28 14:35:13 -04:00
icet
ico
icu4c xerces-c: add variant for transcoder, rework config flags. (#9393) 2018-10-09 15:12:34 -07:00
id3lib
idba
igraph
igv
igvtools install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
ilmbase
image-magick
imake
imp
impute2
infernal
inputproto
intel Intel prefixes (#7469) 2018-08-29 21:09:34 -07:00
intel-daal intel: add 2019.0 (#9328) 2018-09-24 21:27:43 -05:00
intel-gpu-tools
intel-ipp intel: add 2019.0 (#9328) 2018-09-24 21:27:43 -05:00
intel-mkl intel: add 2019.0 (#9328) 2018-09-24 21:27:43 -05:00
intel-mkl-dnn
intel-mpi intel: add 2019.0 (#9328) 2018-09-24 21:27:43 -05:00
intel-parallel-studio Intel parallel studio 2019 cluster edition (#9295) 2018-10-02 13:04:57 -05:00
intel-tbb intel: add 2019.0 (#9328) 2018-09-24 21:27:43 -05:00
intel-xed
intltool
ior
iozone
iperf2
iperf3
ipopt Make builtin flag handlers available in package scope (#8668) 2018-10-09 15:18:31 -07:00
isaac
isaac-server
isl
itstool
itsx
jackcess Add MDB driver support to GDAL (#8614) 2018-08-29 12:35:56 -05:00
jags
jansson
jasper
jbigkit
jchronoss
jdk jdk: added 10.0.2_13 (#9203) 2018-09-14 17:17:32 -07:00
jellyfish
jemalloc
jmol install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
jq
json-c
json-cwx
json-glib
jsoncpp
judy
julia
k8
kahip
kaiju
kaks-calculator
kaldi install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
kallisto
kbproto
kdiff3
kealib
kentutils
kibana Added Kibana package, added Elasticsearch to 6.4.0 (#9239) 2018-09-14 10:50:20 -07:00
kim-api
kmergenie
kokkos kokkos: bugfix for case wherein kokkos backends enabled in spack but not parsed correctly (#9396) 2018-10-01 17:36:55 -06:00
kraken
krb5
krims
kripke
kvasir-mpl
kvtree
laghos Laghos: add version 1.1 (#9389) 2018-09-30 05:38:52 -06:00
lammps lammps: add v20180822 (#9081) 2018-08-23 12:17:27 -05:00
last
latte
launchmon
lazyten
lbann
lbxproxy
lcals
lcms
ldc
ldc-bootstrap
legion
leveldb leveldb: Fix header installation (#9069) 2018-08-22 09:46:11 -05:00
lftp
libaec
libaio
libapplewm
libarchive
libassuan
libatomic-ops
libbeagle
libbeato
libbsd
libbson
libcanberra
libcap
libceed
libcerf
libcheck
libcint libcint: New version 3.0.12 (#9003) 2018-08-16 15:59:26 -05:00
libcircle
libconfig
libcroco
libctl
libdivsufsort
libdmx
libdrm
libdwarf
libedit
libelf
libemos
libepoxy
libev
libevent
libevpath
libfabric libfabric: Add develop version option. (#9074) 2018-08-22 14:21:30 -05:00
libffi Build Python 3.7 with external libffi. (#9245) 2018-09-14 17:07:13 -07:00
libffs
libfontenc
libfs
libgcrypt
libgd
libgeotiff
libgit2
libgpg-error
libgpuarray
libgridxc install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
libgtextutils
libharu
libhio libhio: add patch for 1.4.1.2 release (#9270) 2018-09-18 17:26:34 -06:00
libiberty Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
libice
libiconv Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
libint
libjpeg
libjpeg-turbo
libksba
liblbxutil
liblockfile
libmatheval Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
libmaxminddb
libmesh libMesh: New variant and updated recent versions. (#9186) 2018-09-07 21:13:34 -07:00
libmng
libmongoc libmongoc: Fix build (#9012) 2018-08-17 08:22:30 -05:00
libmonitor
libnbc
libnl
libnova
libogg
liboldx
libpcap
libpciaccess
libpfm4 libpfm4: add version and compiler flags (#9291) 2018-09-28 10:36:27 -07:00
libpipeline
libpng libpng package: add version (#9142) 2018-08-31 10:26:13 -07:00
libpsl
libpthread-stubs
libquo libquo: Packaging updates. (#9076) 2018-08-22 23:17:15 -05:00
librom
libshm
libsigcpp libsigcpp: add a real homepage (#9282) 2018-09-28 14:48:31 -05:00
libsigsegv Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
libsm
libsodium
libspatialindex
libsplash
libssh
libssh2
libsvm
libszip
libtermkey
libtiff
libtool Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
libunistring Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
libunwind libunwind: add version 1.3-rc1 and variant xz (#8989) 2018-08-17 08:22:04 -05:00
libuuid
libuv
libvorbis
libvterm
libwebsockets
libwindowswm
libx11
libxau
libxaw
libxaw3d
libxc
libxcb
libxcomposite
libxcursor
libxdamage
libxdmcp
libxevie
libxext
libxfixes
libxfont
libxfont2
libxfontcache
libxft
libxi
libxinerama
libxkbcommon
libxkbfile
libxkbui
libxml2
libxmu
libxp
libxpm
libxpresent
libxprintapputil
libxprintutil
libxrandr
libxrender
libxres
libxscrnsaver
libxshmfence
libxslt
libxsmm
libxstream
libxt
libxtrap
libxtst
libxv
libxvmc
libxxf86dga
libxxf86misc
libxxf86vm
libyogrt
libzip
lighttpd lighttpd: install to bin vs sbin (#9337) 2018-09-28 18:38:51 -07:00
likwid
linkphase3
linux-headers
listres
llvm Added llvm 7.0.0 (#9296) 2018-09-20 17:21:42 +02:00
llvm-openmp-ompt
lmdb
lmod
lndir
log4cplus
log4cxx
loki
lordec
lrslib
lrzip
lsof
ltrace
lua
lua-bitlib
lua-jit
lua-lpeg
lua-luafilesystem
lua-luaposix
lua-mpack
luit
lulesh
lumpy-sv
lwgrp
lwm2
lz4
lzma
lzo
m4 Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
macsio [WIP] Release 2.0 of the ECP Proxy Apps suite (#9368) 2018-10-02 16:35:41 -06:00
mad-numdiff
mafft
magics
magma
makedepend
mallocmc
man-db
manta
maq
mariadb
masa
masurca install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
matio
matlab matlab: new version (#9427) 2018-10-09 16:58:52 -07:00
maven install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
maverick
mawk
mbedtls
mc
mcl
mdtest
med
meep
mefit install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
megahit
memaxes
meme
memkind
meraculous
mercurial
mesa Package mesa: added dependency on zlib (#9424) 2018-10-03 19:48:42 -07:00
mesa-glu
meshkit
meson
mesquite
metabat
metaphysicl
metasv metasv: add required dependencies (#9254) 2018-09-14 15:49:11 -07:00
metis
mfem install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
microbiomeutil
minced
mindthegap
miniaero
miniamr [WIP] Release 2.0 of the ECP Proxy Apps suite (#9368) 2018-10-02 16:35:41 -06:00
miniasm
miniconda2
miniconda3
minife
minighost
minigmg
minimap2
minimd
miniqmc [WIP] Release 2.0 of the ECP Proxy Apps suite (#9368) 2018-10-02 16:35:41 -06:00
minisign
minismac2d
minitri
minivite miniVite: new package (#9348) 2018-09-26 19:48:34 -06:00
minixyce
minuit
mira
mirdeep2
mitofates
mitos
mkfontdir
mkfontscale
mlhka
moab Add important variants to MOAB and Geant4 (#9409) 2018-10-09 17:05:49 -07:00
modern-wheel
mofem-cephas
mofem-fracture-module
mofem-minimal-surface-equation
mofem-users-modules
molcas
mono
mosh
mothur
motif
motioncor2 motioncor2 - added version 1.1.0 and removed old, unlisted versions (#9229) 2018-09-14 13:57:22 -07:00
mount-point-attributes
mozjs
mpark-variant
mpc Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
mpe2
mpest
mpfr Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
mpibash
mpiblast
mpich mpich: fix 3.2 patch (#9330) 2018-09-28 08:18:55 -05:00
mpifileutils mpifileutils: add v0.8 (#9152) 2018-09-03 20:34:07 -05:00
mpilander
mpileaks
mpip
mpir
mpix-launch-swift install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
mrbayes
mrnet
mrtrix3 install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
mscgen
msgpack-c msgpack-c, snappy: explicitly depend on googletest (#9167) 2018-09-03 20:25:17 -05:00
mshadow
multitail
multiverso
mummer
mumps
munge
muparser
muscle
muse
muster
mvapich2 mvapich2: Use rdma-core for mrail and nemesis*ib* fabrics (#9072) 2018-08-23 07:32:46 -05:00
mxml
mxnet mxnet: added 1.3.0 (#9236) 2018-09-14 11:01:30 -07:00
nag
nalu
nalu-wind
namd Charmpp: rename charm to charmpp according to ++ conventions (#9216) 2018-09-14 17:01:07 -07:00
nano
nanoflann
nanopb
nasm
nauty
ncbi-magicblast
ncbi-rmblastn
ncbi-toolkit
nccl
nccmp
ncdu
ncftp
ncl install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
nco
ncurses Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
ncview
ndiff
nek5000
nekbone fix for issue #8845 (#8988) 2018-08-16 13:22:44 -06:00
nekcem
nektar
neovim
nest New package: NEST Simulator (#9092) 2018-08-29 13:30:29 -04:00
netcdf
netcdf-cxx
netcdf-cxx4
netcdf-fortran
netgauge
netgen
netlib-lapack
netlib-scalapack
netlib-xblas
nettle Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
neuron
nextflow
nfft
nghttp2
nginx
ngmlr
ninja
ninja-fortran
nlohmann-json Added nlohmann-json v3.3.0 (#9463) 2018-10-09 16:54:59 -07:00
nlopt nlopt: Only support release>=2.5.0, since earlier release tarballs were actually AutoTools, not CMake. (#9110) 2018-09-03 20:56:48 -05:00
nmap
nnvm
node-js
notmuch
npb
npm
npth
nspr
numactl
numdiff
nut
nvptx-tools nvptx-tools: add new package (#9378) 2018-10-01 16:55:41 -05:00
nwchem NWChem 6.8.1 (#9140) 2018-09-03 20:36:49 -05:00
ocaml
occa install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
oce
oclint
oclock
octave Java updates: new versions, classpath, and JAVA_HOME (#8613) 2018-08-28 14:35:13 -04:00
octave-optim
octave-splines
octave-struct
octopus
of-adios-write
of-precice
omega-h omega-h: add versions and variants (#9169) 2018-09-05 11:01:45 -07:00
ompss
ompt-openmp
oniguruma
ont-albacore
opa-psm2
opam
opari2
openbabel
openblas openblas: add @0.3.1, patch CMake export bug in @0.3.1:0.3.2 (#9123) 2018-09-03 20:49:45 -05:00
opencoarrays OpenCoarrays: update v2.2.0 (#9215) 2018-09-14 16:59:19 -07:00
opencv add opencv@3.4.3 (#9213) 2018-09-14 17:05:05 -07:00
openexr
openfast
openfoam-com patch for OF.com@18.06 to correctly find KAHIP (#8982) 2018-08-26 19:44:06 -05:00
openfoam-org install_tree: symlink handling and add 'ignore' option (#9019) 2018-08-17 22:08:38 -04:00
openfst
opengl
openglu
openjpeg
openmc openmc: version bump (#7974) 2018-10-03 09:12:14 -06:00
openmpi Added legacylaunchers variant to openmpi (#9336) 2018-09-27 19:29:15 -07:00
opennurbs
openpmd-api Catch2: 2.3.0+ (#9300) 2018-09-20 15:55:18 +02:00
openscenegraph
openslide
openspeedshop Update openspeedshop and cbtf version numbers (#9150) 2018-09-03 20:35:25 -05:00
openspeedshop-utils Update openspeedshop and cbtf version numbers (#9150) 2018-09-03 20:35:25 -05:00
openssh
openssl Build Python 3.7 with external libffi. (#9245) 2018-09-14 17:07:13 -07:00
opium
optional-lite Adds a package for optional-lite header-only library (#9117) 2018-08-29 18:14:59 +02:00
opus
orfm
orthofinder
orthomcl
osu-micro-benchmarks
otf
otf2
p4est patching p4est to select the proper openmp lib (#9381) 2018-10-01 22:43:40 +02:00
p7zip
pacbio-daligner
pacbio-damasker
pacbio-dazz-db
pacbio-dextractor
pacvim Pacvim new (#9273) 2018-10-05 12:07:22 -05:00
pagit
pagmo
paml paml: remove old version, added 4.9h (#9360) 2018-09-26 19:03:35 -07:00
panda
pandaseq
pango
pangomm
papi
papyrus
paradiseo
parallel Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
parallel-netcdf
paraver
paraview ParaView: add versions (#9428) 2018-10-03 19:34:38 -07:00
parmetis
parmgridgen
parquet
parsimonator
parsplice
partitionfinder
patch Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
patchelf
pathfinder
pax-utils
pbbam
pbmpi
pcma
pcre
pcre2
pdf2svg
pdftk
pdsh
pdt
pegtl
pennant
percept
perl Added perl 5.28 (#9379) 2018-10-02 15:48:28 -07:00
perl-algorithm-diff
perl-app-cmd
perl-array-utils
perl-b-hooks-endofscope
perl-bio-perl
perl-bit-vector
perl-cairo
perl-capture-tiny
perl-carp-clan
perl-cgi perl-cgi: new package starting at 4.37 (#9339) 2018-09-28 13:53:40 -05:00
perl-class-data-inheritable
perl-class-inspector
perl-class-load
perl-class-load-xs
perl-compress-raw-bzip2
perl-compress-raw-zlib
perl-contextual-return
perl-cpan-meta-check
perl-data-optlist
perl-data-stag
perl-dbd-mysql
perl-dbd-sqlite perl-dbd-sqlite: new package starting at 1.56 (#9338) 2018-09-28 14:08:14 -05:00
perl-dbfile
perl-dbi
perl-devel-cycle
perl-devel-globaldestruction
perl-devel-overloadinfo
perl-devel-stacktrace
perl-digest-md5
perl-dist-checkconflicts
perl-encode-locale
perl-eval-closure
perl-exception-class
perl-exporter-tiny
perl-extutils-depends
perl-extutils-makemaker
perl-extutils-pkgconfig
perl-file-copy-recursive
perl-file-listing
perl-file-pushd
perl-file-sharedir-install
perl-file-slurp-tiny
perl-file-slurper
perl-file-which
perl-font-ttf
perl-gd
perl-gd-graph
perl-gd-text
perl-gdgraph-histogram perl-gdgraph-histogram: new package (#9250) 2018-09-14 15:50:18 -07:00
perl-graph
perl-graph-readwrite
perl-html-parser
perl-html-tagset
perl-http-cookies
perl-http-daemon
perl-http-date
perl-http-message
perl-http-negotiate
perl-inline
perl-inline-c
perl-intervaltree
perl-io-compress
perl-io-html
perl-io-sessiondata
perl-io-socket-ssl
perl-io-string
perl-json
perl-libwww-perl
perl-list-moreutils
perl-log-log4perl
perl-lwp
perl-lwp-mediatypes
perl-lwp-protocol-https
perl-math-cdf
perl-math-cephes
perl-math-matrixreal
perl-module-build perl-module-build new version (#9404) 2018-10-08 09:12:13 +02:00
perl-module-implementation
perl-module-runtime
perl-module-runtime-conflicts
perl-moose
perl-mozilla-ca
perl-mro-compat
perl-namespace-clean
perl-net-http
perl-net-scp-expect
perl-net-ssleay
perl-package-deprecationmanager
perl-package-stash
perl-package-stash-xs
perl-padwalker
perl-parallel-forkmanager
perl-params-util
perl-parse-recdescent
perl-pdf-api2
perl-pegex
perl-perl4-corelibs perl-perl4-corelibs: new package (#9459) 2018-10-09 09:17:21 -05:00
perl-perl6-slurp
perl-perlio-gzip
perl-perlio-utf8-strict
perl-soap-lite
perl-star-fusion perl-star-fusion package: update latest version (#9104) 2018-08-28 13:22:18 -04:00
perl-statistics-descriptive
perl-statistics-pca
perl-sub-exporter
perl-sub-exporter-progressive
perl-sub-identify
perl-sub-install
perl-sub-name
perl-sub-uplevel
perl-svg
perl-swissknife
perl-task-weaken
perl-term-readkey
perl-test-cleannamespaces
perl-test-deep
perl-test-differences
perl-test-exception
perl-test-fatal
perl-test-memory-cycle
perl-test-most
perl-test-needs
perl-test-requires
perl-test-requiresinternet
perl-test-warn
perl-test-warnings
perl-text-csv
perl-text-diff
perl-text-simpletable
perl-text-soundex
perl-text-unidecode
perl-time-hires
perl-time-piece
perl-try-tiny
perl-uri
perl-uri-escape
perl-version
perl-want
perl-www-robotrules
perl-xml-libxml
perl-xml-parser
perl-xml-parser-lite
perl-xml-simple
perl-yaml-libyaml
petsc petsc: add petsc-3.10.2 (#9467) 2018-10-09 13:14:41 -05:00
pexsi install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
pfft
pflotran
pfunit
pgdspider
pgi
pgmath
phantompeakqualtools
phast
phasta
phist
phylip
picard install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
picsar PICSAR: new package (#9411) 2018-10-02 16:04:49 -06:00
picsarlite PICSARlite: actually builds PICSARlite now instead of PICSAR (#9410) 2018-10-02 15:46:31 -06:00
pidx
pigz
pilon install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
pindel install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
piranha
pism
pixman
pkg-config
pkgconf
planck-likelihood
plasma
platypus
plink
plplot
plumed plumed: updating plumed to latest version (#9227) 2018-09-14 17:13:22 -07:00
pmgr-collective
pmix
pnfft
pngwriter
pnmpi
poamsa
pocl Update the pocl package (#9090) 2018-08-24 12:26:17 -05:00
polymake
poppler
poppler-data
porta
portage
portcullis portcullis: new package starting at 1.1.2 (#9218) 2018-09-14 15:55:58 -07:00
postgresql
ppl
pplacer New package: pplacer (#9112) 2018-10-08 16:02:12 -05:00
prank
precice
presentproto
preseq
price
primer3
prinseq-lite
printproto
prng
probconsrna
prodigal
proj
protobuf
proxymngr
pruners-ninja
ps-lite
psi4
pslib
psm
psmc
pstreams
pugixml
pumi
pv
pvm
pxz
py-3to2
py-4suite-xml
py-abipy
py-adios
py-affine
py-alabaster
py-apache-libcloud
py-apipkg
py-appdirs
py-appnope
py-apscheduler
py-argcomplete
py-argparse
py-ase
py-asn1crypto
py-astroid
py-astropy
py-atomicwrites Update to latest version of pytest and dependencies (#9087) 2018-08-25 14:12:46 -05:00
py-attrs
py-autopep8
py-avro
py-avro-json-serializer
py-babel
py-backcall
py-backports-abc
py-backports-functools-lru-cache
py-backports-shutil-get-terminal-size
py-backports-ssl-match-hostname
py-basemap
py-bcbio-gff
py-beautifulsoup4
py-binwalk
py-biom-format
py-biopython
py-bitarray
py-bitstring
py-bleach
py-blessings
py-bokeh
py-boltons
py-bottleneck
py-breakseq2
py-brian
py-brian2
py-bsddb3
py-bx-python
py-cartopy
py-cclib
py-cdat-lite
py-cdo
py-certifi
py-cffi
py-chardet
py-checkm-genome
py-cheetah
py-click
py-cligj
py-cloudpickle
py-cnvkit
py-cogent Feature/py pycogent New-Version (#9095) 2018-09-04 14:34:18 -05:00
py-colorama
py-colormath py-colormath: new version, requires newer networkx (#9237) 2018-09-14 10:35:45 -07:00
py-configparser
py-counter
py-coverage
py-cpuinfo
py-crispresso
py-crossmap
py-cryptography
py-csvkit
py-current
py-cutadapt
py-cvxopt
py-cycler
py-cython
py-dask
py-dateutil
py-dbf
py-decorator py-decorator: new version (#9240) 2018-09-14 15:51:43 -07:00
py-deeptools
py-dendropy
py-dill
py-discover
py-dlcpar
py-docopt
py-docutils
py-doxypy
py-doxypypy
py-dryscrape
py-dxchange
py-dxfile
py-easybuild-easyblocks
py-easybuild-easyconfigs
py-easybuild-framework
py-edffile
py-editdistance
py-elasticsearch
py-elephant
py-emcee
py-entrypoints
py-enum34
py-epydoc
py-espresso py-espresso: apply patch to v4.0.0 only (#9196) 2018-09-13 10:00:21 +00:00
py-espressopp
py-et-xmlfile
py-eventlet
py-execnet
py-fastaindex
py-fasteners
py-faststructure
py-filelock py-filelock: new package (#9136) 2018-08-31 11:21:55 -07:00
py-fiscalyear
py-flake8 py-flake8: enum34 not required for python 3.4 and up (#9415) 2018-10-03 19:33:22 -07:00
py-flake8-polyfill py-flake8-polyfill: removing unnecessary build_args (#9284) 2018-09-28 14:49:45 -05:00
py-flask
py-flask-compress
py-flask-socketio
py-flexx
py-fn
py-fparser
py-funcsigs Update to latest version of pytest and dependencies (#9087) 2018-08-25 14:12:46 -05:00
py-functools32
py-future
py-futures
py-gdbgui
py-genders
py-genshi
py-gevent
py-git2
py-git-review
py-gnuplot
py-goatools
py-gpaw
py-greenlet
py-griddataformats
py-guidata
py-guiqwt
py-h5py py-h5py: add version 2.8.0 (#9231) 2018-09-14 15:56:44 -07:00
py-html2text
py-html5lib
py-htseq
py-httpbin
py-hypothesis
py-idna
py-igraph
py-illumina-utils
py-imageio
py-imagesize
py-iminuit
py-importlib
py-ipaddress
py-ipdb
py-ipykernel
py-ipython
py-ipython-genutils
py-ipywidgets
py-isort
py-itsdangerous
py-jdcal
py-jedi
py-jinja2
py-joblib
py-jprops py-jprops: new package @ 1.0.2 (#9417) 2018-10-05 10:58:49 -05:00
py-jpype
py-jsonschema
py-junit-xml
py-jupyter-client
py-jupyter-console
py-jupyter-core
py-jupyter-notebook
py-keras
py-kiwisolver
py-lark-parser
py-latexcodec
py-lazy
py-lazy-object-proxy
py-lazy-property
py-lazyarray
py-libconf
py-libensemble Update py-libensemble package to v0.3.0 (#9210) 2018-09-14 17:15:31 -07:00
py-line-profiler
py-linecache2
py-lit
py-llvmlite
py-lmfit
py-localcider
py-locket
py-lockfile
py-logilab-common
py-lrudict
py-lxml
py-lzstring
py-macholib
py-machotools
py-macs2
py-maestrowf py-maestrowf: Addition of new releases. (#9135) 2018-09-04 14:33:55 -05:00
py-mako
py-mappy
py-markdown py-markdown: fix url and hashes (#9235) 2018-09-14 15:51:20 -07:00
py-markupsafe
py-matplotlib added py-matplotlib version 3.0.0 (#9335) 2018-10-02 15:35:06 -07:00
py-mccabe
py-mdanalysis
py-meep
py-memory-profiler
py-methylcode
py-mg-rast-tools
py-misopy
py-mistune
py-mock
py-moltemplate
py-mongo
py-monotonic
py-monty
py-more-itertools Update to latest version of pytest and dependencies (#9087) 2018-08-25 14:12:46 -05:00
py-mpi4py
py-mpmath
py-multiprocess
py-multiqc py-multiqc: needs newer py-spectra (#9226) 2018-09-14 15:52:29 -07:00
py-mx
py-mxnet
py-myhdl
py-mysqldb1
py-natsort
py-nbconvert
py-nbformat
py-neo
py-nestle
py-netcdf4
py-netifaces
py-networkx py-networkx: new version (#9241) 2018-09-14 15:52:02 -07:00
py-nose
py-nosexcover
py-numba
py-numexpr
py-numexpr3
py-numpy Update to latest version of pytest and dependencies (#9087) 2018-08-25 14:12:46 -05:00
py-numpydoc
py-olefile
py-ont-fast5-api
py-openpmd-validator
py-openpyxl
py-openslide-python
py-opentuner
py-ordereddict
py-oset
py-owslib
py-packaging
py-palettable
py-pandas
py-paramiko
py-partd
py-pathlib2 Update to latest version of pytest and dependencies (#9087) 2018-08-25 14:12:46 -05:00
py-pathos
py-pathspec
py-patsy
py-pbr
py-pep8-naming
py-perf
py-performance
py-periodictable
py-petsc4py
py-pexpect
py-phonopy
py-pickleshare
py-picrust Feature/py picrust (#9184) 2018-09-14 17:24:17 -07:00
py-pil
py-pillow
py-pip
py-pipits
py-pkgconfig
py-plotly
py-pluggy Update to latest version of pytest and dependencies (#9087) 2018-08-25 14:12:46 -05:00
py-ply
py-pmw
py-poster
py-pox
py-ppft
py-prettytable
py-progress py-progress: new package. (#9420) 2018-10-03 17:12:30 +02:00
py-proj
py-projectq
py-prompt-toolkit
py-protobuf
py-psutil
py-psyclone
py-ptyprocess
py-pudb
py-py Update to latest version of pytest and dependencies (#9087) 2018-08-25 14:12:46 -05:00
py-py2bit
py-py2cairo
py-py2neo
py-py4j py-py4j: add version 0.10.6 (#9418) 2018-10-04 15:32:54 -05:00
py-pyani
py-pyasn1
py-pybedtools
py-pybigwig
py-pybind11 py-pybind11: add version 2.2.4 (#9355) 2018-09-26 19:19:46 -07:00
py-pybtex
py-pybtex-docutils
py-pychecker
py-pycodestyle
py-pycparser
py-pycrypto
py-pycurl
py-pydatalog
py-pydispatcher
py-pydot
py-pyelftools
py-pyepsg
py-pyfaidx
py-pyfasta
py-pyfftw
py-pyflakes
py-pygdbmi
py-pygments
py-pygobject
py-pygpu
py-pygtk
py-pylint
py-pymatgen
py-pyminifier
py-pymol
py-pympler
py-pymysql py-pymysql: new package (#9122) 2018-09-03 20:50:39 -05:00
py-pynn
py-pypar
py-pyparsing
py-pypeflow
py-pyprof2html
py-pyqi
py-pyqt
py-pyrad
py-pysam
py-pyscaf
py-pyserial
py-pyshp
py-pyside
py-pysocks
py-pyspark py-pyspark: new package (#9419) 2018-10-08 09:03:31 +02:00
py-pysqlite
py-pytables
py-pytest Update to latest version of pytest and dependencies (#9087) 2018-08-25 14:12:46 -05:00
py-pytest-cov
py-pytest-flake8
py-pytest-httpbin
py-pytest-mock
py-pytest-runner
py-pytest-xdist
py-python-daemon
py-python-engineio
py-python-gitlab
py-python-levenshtein
py-python-socketio
py-pythonqwt
py-pytorch
py-pytz
py-pyutilib
py-pyvcf
py-pywavelets
py-pyyaml added version for kull support (#9141) 2018-09-03 20:36:15 -05:00
py-qtawesome
py-qtconsole
py-qtpy
py-quantities
py-quast
py-radical-utils
py-ranger
py-rasterio
py-readme-renderer
py-regex
py-reportlab
py-requests
py-requests-toolbelt
py-restview
py-rope
py-rpy2
py-rsa
py-rseqc
py-rtree
py-saga-python
py-scandir Update to latest version of pytest and dependencies (#9087) 2018-08-25 14:12:46 -05:00
py-scientificpython
py-scikit-image
py-scikit-learn
py-scipy Update to latest version of pytest and dependencies (#9087) 2018-08-25 14:12:46 -05:00
py-seaborn
py-setuptools Update to latest version of pytest and dependencies (#9087) 2018-08-25 14:12:46 -05:00
py-setuptools-git
py-setuptools-scm Update to latest version of pytest and dependencies (#9087) 2018-08-25 14:12:46 -05:00
py-sfepy
py-sh
py-shapely
py-shiboken
py-simplegeneric
py-simplejson
py-singledispatch
py-sip
py-six
py-slepc4py
py-slurm-pipeline
py-sncosmo
py-snowballstemmer
py-snuggs
py-spectra py-spectra: new version (#9224) 2018-09-14 16:59:50 -07:00
py-spefile
py-spglib
py-sphinx
py-sphinx-bootstrap-theme
py-sphinx-rtd-theme
py-sphinxcontrib-bibtex
py-sphinxcontrib-programoutput
py-sphinxcontrib-websupport
py-spyder
py-spykeutils
py-sqlalchemy
py-statsmodels
py-stevedore
py-storm
py-subprocess32
py-symengine
py-symfit
py-sympy
py-tabulate
py-tappy
py-terminado
py-testinfra
py-tetoolkit
py-theano
py-tifffile
py-toml
py-tomopy
py-toolz
py-tornado
py-tqdm
py-traceback2
py-traitlets
py-tuiview
py-twisted
py-typing
py-tzlocal
py-udunits
py-umi-tools
py-unittest2
py-unittest2py3k
py-urllib3
py-urwid
py-vcversioner
py-virtualenv
py-virtualenv-clone
py-virtualenvwrapper
py-vmd-python
py-vsc-base
py-vsc-install
py-wcsaxes
py-wcwidth
py-webkit-server
py-weblogo
py-werkzeug
py-wheel
py-widgetsnbextension
py-wrapt
py-xarray
py-xattr
py-xlrd
py-xlsxwriter
py-xmlrunner
py-xopen
py-xpyb
py-xvfbwrapper
py-yamlreader
py-yapf
py-yt
py-ytopt ytopt: new package (#9403) 2018-10-01 23:16:32 -07:00
py-zmq
py-zope-event
py-zope-interface
pythia6 New package: pythia6 (#9340) 2018-10-09 11:56:43 -07:00
python python: add details on missing library to error message (#9332) 2018-10-03 19:46:14 -07:00
qbank
qbox install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
qhull
qmcpack QMCPACK Spack Package Update (Summer 2018) (#9008) 2018-08-18 11:26:17 -05:00
qmd-progress
qorts install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
qrupdate
qt qt: fix dbus builds (#9315) 2018-09-25 11:33:19 -05:00
qt-creator
qtgraph qtgraph and cbtf-argonavis create proper library paths in modules (#8797) 2018-08-17 15:58:08 -07:00
qthreads
quantum-espresso
quinoa Charmpp: rename charm to charmpp according to ++ conventions (#9216) 2018-09-14 17:01:07 -07:00
qwt
r install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
r-a4
r-a4base
r-a4classif
r-a4core
r-a4preproc
r-a4reporting
r-abadata
r-abaenrichment
r-abind
r-absseq
r-acde
r-acepack
r-acgh
r-acme
r-ada
r-adabag
r-ade4
r-adegenet
r-adsplit
r-aer
r-affxparser
r-affy
r-affycomp
r-affycompatible
r-affycontam
r-affycoretools
r-affydata
r-affyexpress
r-affyilm
r-affyio
r-affypdnn
r-affyplm
r-affyqcreport
r-affyrnadegradation
r-agdex
r-agilp
r-agimicrorna
r-aims
r-aldex2
r-allelicimbalance
r-alpine
r-als
r-alsace
r-altcdfenvs
r-amap
r-ampliqueso
r-analysispageserver
r-anaquin
r-aneufinder
r-aneufinderdata
r-animation New package: r-animation (#9314) 2018-09-24 11:28:05 -07:00
r-annaffy
r-annotate r-annotate: new version (#9061) 2018-08-22 09:45:11 -05:00
r-annotationdbi r-annotationdbi : new version (#9040) 2018-08-21 14:15:17 -05:00
r-annotationfilter
r-annotationforge
r-annotationhub
r-ape
r-argparse r-argparse: new package (#8944) 2018-08-13 22:21:30 -05:00
r-assertthat
r-backports
r-bamsignals
r-base64
r-base64enc
r-bbmisc
r-beanplot
r-bh
r-biasedurn
r-bindr
r-bindrcpp r-bindrcpp: add new version (#8950) 2018-08-11 09:21:05 -05:00
r-biobase r-biobase: new version (#9038) 2018-08-21 14:15:42 -05:00
r-biocgenerics r-biocgenerics: new version (#9039) 2018-08-21 14:15:30 -05:00
r-biocinstaller
r-biocparallel r-biocparallel: new link dependency added in last version (#9274) 2018-09-28 13:56:46 -05:00
r-biocstyle
r-biom-utils
r-biomart r-biomart: new version; (#9058) 2018-09-03 21:03:47 -05:00
r-biomformat
r-biostrings r-biostrings: new version (#9048) 2018-08-22 12:21:43 +02:00
r-biovizbase
r-bit
r-bit64
r-bitops
r-blob
r-bookdown
r-boot
r-brew
r-broom
r-bsgenome
r-bumphunter
r-c50
r-callr
r-car
r-caret
r-category
r-catools
r-cdcfluview
r-cellranger
r-cghflasso
r-checkmate
r-checkpoint
r-chemometrics Tanim (#9158) 2018-09-07 16:00:52 -05:00
r-chron
r-circlize
r-class
r-classint
r-cli
r-clipr
r-cluster
r-clusterprofiler
r-cner
r-coda
r-codetools
r-coin
r-colorspace
r-complexheatmap
r-corpcor
r-corrplot
r-covr
r-cowplot
r-crayon
r-crosstalk
r-ctc r-ctc: new package (#8936) 2018-08-12 19:46:14 -05:00
r-cubature
r-cubist
r-curl
r-data-table
r-dbi
r-dbplyr
r-delayedarray r-delayedarray: new version (#9053) 2018-08-22 09:39:52 -05:00
r-deldir
r-dendextend
r-deoptim
r-deoptimr
r-deseq
r-deseq2 r-deseq2: new version (#9062) 2018-09-03 21:03:08 -05:00
r-desolve
r-devtools
r-diagrammer
r-dicekriging
r-dichromat
r-diffusionmap
r-digest
r-diptest
r-dirichletmultinomial
r-dismo
r-dnacopy
r-do-db
r-domc
r-doparallel
r-dorng
r-dose
r-downloader
r-dplyr new versions of r-dplyr,r-plogr,r-rlang (#9313) 2018-09-24 11:22:04 -07:00
r-dt
r-dtw
r-dygraphs
r-e1071
r-edger r-edger: add r-rcpp dependency (#9457) 2018-10-08 16:25:31 -05:00
r-ellipse
r-ensembldb
r-ergm
r-evaluate
r-expm
r-factoextra
r-factominer
r-fastcluster
r-fastmatch
r-ff
r-fftwtools
r-fgsea
r-filehash
r-findpython r-findpython: new package (#8943) 2018-08-11 09:23:34 -05:00
r-fit-models
r-flashclust
r-flexclust
r-flexmix
r-fnn Tanim (#9158) 2018-09-07 16:00:52 -05:00
r-forcats
r-foreach
r-forecast
r-foreign
r-formatr
r-formula
r-fpc
r-fracdiff
r-futile-logger
r-futile-options
r-gbm
r-gcrma
r-gdata
r-gdsfmt
r-geiger
r-genefilter r-genefilter: new version (#9063) 2018-08-22 09:45:56 -05:00
r-genelendatabase r-genelendatabase: new package (#8938) 2018-08-13 22:21:03 -05:00
r-geneplotter r-geneplotter: new version (#9060) 2018-08-22 09:44:48 -05:00
r-genie3
r-genomeinfodb r-genomeinfodb: new version (#9051) 2018-08-22 09:38:28 -05:00
r-genomeinfodbdata r-genomeinfodbdata: new version (#9050) 2018-08-22 09:37:56 -05:00
r-genomicalignments r-genomicalignments: new version (#9055) 2018-09-03 21:04:22 -05:00
r-genomicfeatures r-genomicfeatures: new version (#9057) 2018-08-22 09:41:38 -05:00
r-genomicranges r-genomicranges: new version (#9052) 2018-08-22 09:39:23 -05:00
r-geomorph
r-geoquery
r-geosphere
r-getopt
r-getoptlong
r-ggally
r-ggbio
r-ggdendro
r-ggjoy
r-ggmap
r-ggplot2
r-ggpubr
r-ggrepel
r-ggridges
r-ggsci
r-ggvis
r-gistr
r-git2r
r-glimma r-glimma: new package (#8940) 2018-08-13 22:20:41 -05:00
r-glmnet
r-globaloptions
r-glue
r-gmodels
r-gmp
r-go-db
r-googlevis
r-goplot r-goplot: new package (#8942) 2018-08-11 09:26:16 -05:00
r-gosemsim
r-goseq r-goseq: new package (#8939) 2018-08-26 19:45:23 -05:00
r-gostats
r-gplots
r-graph
r-gridbase
r-gridextra
r-gseabase
r-gss
r-gsubfn
r-gtable
r-gtools
r-gtrellis
r-gviz
r-haven
r-hexbin
r-highr
r-hmisc
r-hms
r-htmltable
r-htmltools
r-htmlwidgets
r-httpuv
r-httr
r-hwriter
r-hypergraph
r-ica
r-igraph
r-illuminaio
r-impute
r-influencer
r-inline
r-interactivedisplaybase
r-ipred
r-iranges r-iranges: new version (#9041) 2018-08-21 15:02:52 -05:00
r-irdisplay
r-irkernel
r-irlba
r-iso
r-iterators
r-janitor
r-jaspar2018
r-jomo
r-jpeg
r-jsonlite
r-kegg-db
r-kegggraph
r-keggrest
r-kernlab
r-kernsmooth
r-kknn
r-knitr
r-ks Tanim (#9158) 2018-09-07 16:00:52 -05:00
r-labeling
r-lambda-r
r-laplacesdemon
r-lars Tanim (#9158) 2018-09-07 16:00:52 -05:00
r-lattice
r-latticeextra
r-lava
r-lazyeval
r-leaflet
r-leaps
r-learnbayes
r-lhs
r-limma r-limma: new version (#8952) 2018-08-13 22:18:12 -05:00
r-lme4
r-lmtest
r-locfit
r-log4r
r-lpsolve
r-lsei
r-lubridate
r-magic
r-magrittr
r-makecdfenv
r-maldiquant
r-mapproj
r-maps
r-maptools
r-markdown
r-mass
r-matr
r-matrix
r-matrixmodels
r-matrixstats
r-mclust
r-mcmcglmm
r-mco
r-mda
r-memoise
r-mergemaid
r-methodss3
r-mgcv
r-mgraster
r-mice
r-mime
r-minfi
r-minqa
r-misc3d r-misc3d: add a real homepage (#9283) 2018-09-28 13:54:50 -05:00
r-mitml
r-mixtools
r-mlbench
r-mlinterfaces
r-mlr
r-mlrmbo
r-mmwrweek
r-mnormt
r-modelmetrics
r-modelr
r-modeltools
r-mpm
r-msnbase
r-multcomp
r-multicool Tanim (#9158) 2018-09-07 16:00:52 -05:00
r-multtest
r-munsell
r-mvtnorm
r-mzid
r-mzr
r-nanotime
r-ncbit
r-ncdf4
r-network
r-networkd3
r-nlme
r-nloptr r-nloptr: Explicit depends_on(nlopt). Previously there was a hidden d… (#9176) 2018-09-14 08:11:16 -05:00
r-nmf
r-nnet
r-nnls
r-nor1mix
r-np
r-numderiv
r-oligoclasses
r-oo
r-openssl
r-org-hs-eg-db
r-organismdbi
r-packrat
r-pacman
r-pamr
r-pan
r-parallelmap
r-paramhelpers
r-party
r-partykit
r-pathview
r-pbapply
r-pbdzmq
r-pbkrtest
r-pcamethods
r-pcapp Tanim (#9158) 2018-09-07 16:00:52 -05:00
r-permute
r-pfam-db
r-phangorn
r-phantompeakqualtools
r-phyloseq
r-picante
r-pkgconfig
r-pkgmaker
r-plogr new versions of r-dplyr,r-plogr,r-rlang (#9313) 2018-09-24 11:22:04 -07:00
r-plot3d
r-plotly
r-plotrix
r-pls
r-plyr
r-pmcmr
r-png
r-powerlaw
r-prabclus
r-praise
r-preprocesscore
r-prettyunits
r-proc
r-processx new package: r-processx (#9342) 2018-09-26 19:12:06 -07:00
r-prodlim
r-progress
r-protgenerics
r-proto r-proto: added 1.0.0 (#9456) 2018-10-09 08:44:17 -05:00
r-proxy
r-pryr
r-ps new package: r-ps (#9341) 2018-09-26 19:08:55 -07:00
r-psych
r-ptw
r-purrr
r-quadprog
r-quantmod
r-quantreg
r-quantro
r-qvalue r-qvalue: new version (#9059) 2018-08-22 09:44:21 -05:00
r-r6
r-randomforest
r-ranger
r-rappdirs
r-raster
r-rbgl
r-rbokeh
r-rcolorbrewer
r-rcpp
r-rcpparmadillo
r-rcppblaze
r-rcppcctz
r-rcppcnpy
r-rcppeigen
r-rcppprogress
r-rcurl
r-rda
r-readr
r-readxl r-readxl: added 1.1.0 (#9454) 2018-10-08 15:40:45 -05:00
r-registry
r-rematch
r-reordercluster
r-reportingtools
r-repr
r-reprex
r-reshape
r-reshape2
r-rex
r-rgdal
r-rgenoud
r-rgeos
r-rgl
r-rgooglemaps
r-rgraphviz
r-rhdf5
r-rhtslib
r-rinside
r-rjags
r-rjava
r-rjson
r-rjsonio
r-rlang new versions of r-dplyr,r-plogr,r-rlang (#9313) 2018-09-24 11:22:04 -07:00
r-rmarkdown
r-rminer
r-rmpfr
r-rmpi
r-rmysql
r-rngtools
r-robustbase
r-rocr
r-rodbc added list URL for r-rodbc (#9460) 2018-10-08 16:25:52 -05:00
r-rots r-rots: fix package type (#9344) 2018-09-28 13:11:09 -05:00
r-roxygen2
r-rpart
r-rpart-plot
r-rpostgresql
r-rprojroot
r-rsamtools r-rsamtools: new version (#9049) 2018-08-22 09:37:03 -05:00
r-rsnns
r-rsolnp
r-rsqlite
r-rstan
r-rstudioapi
r-rtracklayer r-rtracklayer: new version (#9056) 2018-08-22 09:43:25 -05:00
r-rtsne
r-rvcheck
r-rvest
r-rzmq
r-s4vectors r-s4vectors: new version (#9043) 2018-08-21 14:14:05 -05:00
r-samr
r-sandwich
r-scales
r-scatterplot3d
r-sdmtools
r-segmented
r-selectr
r-seqinr
r-seqlogo
r-seurat
r-sf
r-sfsmisc
r-shape
r-shiny
r-shinydashboard
r-shortread
r-siggenes
r-simpleaffy
r-sm r-sm: new package (#8945) 2018-08-11 09:22:21 -05:00
r-smoof
r-sn
r-snow
r-snowfall
r-snprelate
r-som Tanim (#9158) 2018-09-07 16:00:52 -05:00
r-somaticsignatures
r-sourcetools
r-sp
r-sparsem
r-spatial
r-spdep
r-speedglm
r-spem
r-splitstackshape
r-sqldf
r-squash
r-stanheaders
r-statmod
r-statnet-common
r-stringi
r-stringr
r-strucchange
r-subplex
r-summarizedexperiment r-summarizedexperiment: new version (#9054) 2018-09-04 14:34:45 -05:00
r-survey
r-survival
r-sva
r-tarifx
r-tclust
r-tensora
r-testit
r-testthat
r-tfbstools
r-tfmpvalue
r-th-data
r-threejs
r-tibble
r-tidycensus
r-tidyr
r-tidyselect
r-tidyverse
r-tiff
r-tigris
r-timedate
r-tmixclust
r-topgo
r-trimcluster
r-truncnorm
r-trust
r-tseries
r-tsne
r-ttr
r-udunits2
r-units
r-utf8
r-utils
r-uuid
r-variantannotation
r-varselrf
r-vcd
r-vegan
r-vgam
r-vipor
r-viridis
r-viridislite
r-visnetwork
r-vsn
r-whisker
r-withr
r-xde
r-xgboost
r-xlconnect
r-xlconnectjars
r-xlsx
r-xlsxjars
r-xmapbridge
r-xml
r-xml2
r-xtable
r-xts
r-xvector r-xvector: new version (#9045) 2018-08-21 14:13:39 -05:00
r-yaml
r-yapsa
r-yaqcaffy
r-yarn
r-zlibbioc r-zlibbioc: new version (#9044) 2018-08-21 14:13:52 -05:00
r-zoo
racon
raft
ragel
raja
randfold
random123
randrproto
range-v3 range-v3 package (#9093) 2018-08-24 09:41:25 -05:00
rankstr
rapidjson
ravel
raxml raxml: build all matching variants (#9377) 2018-10-02 09:20:47 -05:00
ray
rclone new package: rclone (#9268) 2018-09-18 18:39:07 -07:00
rdma-core rdma-core: Fix checksum for @17.1 (#9480) 2018-10-10 14:06:51 +02:00
rdp-classifier
re2c
readfq
readline Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
recordproto
redset
redundans redundans: add py-numpy dep, snap-berkeley version constraint (#9354) 2018-10-01 05:54:50 -05:00
relion added relion version 3 (beta) (#8872) 2018-08-16 10:51:58 -05:00
rempi
rename
rendercheck
renderproto
repeatmasker install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
resourceproto
revbayes
rgb
rhash
rlwrap
rmats rmats: new package starting at 4.0.2 (#9243) 2018-09-14 14:54:26 -07:00
rmlab
rna-seqc install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
rngstreams
rockstar install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
root
rose
ross ROSS package: fix build error and add v7.0.0 (#9128) 2018-08-29 13:13:50 -04:00
rr
rsbench
rsem
rstart
rsync
rtags
rtax
ruby
ruby-gnuplot
ruby-narray
ruby-ronn
ruby-rubyinline
ruby-svn2git
ruby-terminal-table
rust
rust-bindgen
sabre
sailfish
salmon salmon: remove static link to libstdc++ (#9343) 2018-10-04 20:57:33 -05:00
sambamba
samblaster
samrai
samtools Add samtools 1.9 (#8961) 2018-08-12 18:54:50 -05:00
sandbox
sas
satsuma2
savanna install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
saws
sbt install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
scala
scalasca
scalpel
scan-for-matches
scons
scorec-core
scorep scorep: make optional packages variants (#9011) 2018-08-18 11:25:05 -05:00
scotch
scr install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
screen Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
scripts
scrnsaverproto
sctk install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
sdl2
sdl2-image
sed Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
seqan
seqprep
seqtk
serf
sessreg
setxkbmap
sga
shapeit
shared-mime-info
shiny-server
shocklibs
shoremap
shortbred
shortstack
showfont
shuffile
sickle
siesta
signalp
signify
silo Fix two dependencies with silo. (#9153) 2018-09-03 16:43:00 +02:00
simplemoc
simul
simulationio
singularity singularity: new version 2018-08-31 08:47:24 -07:00
skilion-onedrive Onedrive: a new package. (#9130) 2018-09-04 14:35:49 -05:00
sleef
slepc petsc: add new versions 3.9.4 and 3.10.0 (#9319) 2018-09-24 23:57:38 -05:00
slurm Added slurm 17.11 and 18.08 (#9345) 2018-09-27 13:34:41 -07:00
smalt
smproxy
snakemake
snap
snap-berkeley
snap-korf
snappy msgpack-c, snappy: explicitly depend on googletest (#9167) 2018-09-03 20:25:17 -05:00
snbone
sniffles
snpeff install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
snphylo install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
snptest
soap2
soapdenovo2
soapdenovo-trans
soapindel
soapsnp
sofa-c
somatic-sniper
sortmerna
sosflow
sowing
sox
spades Spades: add version 3.12 (#9286) 2018-10-02 17:24:39 -07:00
span-lite Adds a package for span-lite header-only library (#9118) 2018-08-29 11:01:35 +02:00
spark Java updates: new versions, classpath, and JAVA_HOME (#8613) 2018-08-28 14:35:13 -04:00
sparsehash
sparta
spdlog Add newer versions of spdlog (#9290) 2018-09-20 17:53:15 +02:00
spectrum-mpi
speex
spglib
sph2pipe
spherepack
spindle
spot
sqlite Build Python 3.7 with external libffi. (#9245) 2018-09-14 17:07:13 -07:00
sqlitebrowser
squid
sra-toolkit
sspace-longread
sspace-standard sspace-standard: add perl-perl4-corelibs dep, fix perl scripts (#9473) 2018-10-09 16:54:32 -07:00
sst-dumpi
sst-macro sst-macro package: add versions and variants (#9271) 2018-09-18 19:06:13 -07:00
stacks
staden-io-lib
star star - added latest versions with shasum (#9257) 2018-09-16 15:44:33 -05:00
star-ccm-plus
startup-notification
stat
stc
steps steps: new package starting at 3.3 (#9173) 2018-09-11 14:43:15 +02:00
stow Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
strace
stream
strelka
stress
string-view-lite Add string-view-lite package for header only library (#9125) 2018-08-29 06:54:20 +02:00
stringtie
structure
strumpack STRUMPACK: new package (#9429) 2018-10-09 08:44:49 -05:00
sublime-text install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
subread
subversion
suite-sparse
sumaclust
sundials SUNDIALS: add new versions (#9401) 2018-10-03 19:37:54 -07:00
superlu
superlu-dist superlu_dist: (master) has cxx11 sources - so update make.inc to list cxx11 compilers (#9316) 2018-09-24 21:53:14 -05:00
superlu-mt
supernova install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
sw4lite sw4lite: add v1.1 (#9289) 2018-09-19 13:30:28 -06:00
swap-assembler
swarm
swfft
swiftsim
swig
symengine
sympol
sz
tabix
talass new package: TALASS (#9326) 2018-09-26 18:15:47 -07:00
talloc
tantan
tar Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
targetp
task
taskd
tasmanian
tassel
tau
tcl Set libs property for tcl and tk (#9372) 2018-09-27 19:34:18 -07:00
tcl-itcl
tcl-tcllib
tcl-tclxml
tclap
tcoffee
tcptrace
tcsh
tealeaf
templight
templight-tools
tetgen
tethex
texinfo Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
texlive
the-platinum-searcher install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
the-silver-searcher
thornado-mini Spackage for Thornado-mini (#9363) 2018-10-02 16:03:58 -06:00
thrift Java updates: new versions, classpath, and JAVA_HOME (#8613) 2018-08-28 14:35:13 -04:00
thrust
tig
tinyxml install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
tinyxml2
tioga
tk Set libs property for tcl and tk (#9372) 2018-09-27 19:34:18 -07:00
tldd New package: tldd (#9434) 2018-10-09 09:15:42 -05:00
tmalign
tmhmm
tmux
tmuxinator
tophat
tppred
tracer new package: TraceR (#9298) 2018-10-02 11:04:11 -07:00
transabyss
transdecoder
transposome
transset
trapproto
tree
treesub treesub: new package starting at 0.2 (#9361) 2018-10-08 16:26:51 -05:00
trf
triangle
trilinos trilinos: extend TPetra explicit instantiations and fix missing Teuchos counterparts (#9448) 2018-10-09 12:07:13 -07:00
trimgalore
trimmomatic install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
trinity trinity: full dependencies (#9064) 2018-09-04 14:35:06 -05:00
trnascan-se
turbine
turbomole
tut
twm
tycho2
typhon
typhonio
uberftp
ucx new package versions: ucx, libhio, and hwloc (#9365) 2018-09-26 18:53:54 -07:00
udunits2
ufo-core
ufo-filters
umpire
unblur
uncrustify
unibilium
unison
units Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
unixodbc
unuran
unzip
usearch
util-linux
util-macros
uuid
valgrind Valgrind: add ubsan and only64bit variants. (#9302) 2018-10-04 16:06:10 -07:00
vampirtrace
vardictjava
varscan
vc
vcftools
vcsh
vdt
vecgeom VecGeom: add versions and cxxstd variant (#9303) 2018-10-04 16:11:28 -07:00
veclibfort
vegas2
veloc
velvet
verilator
verrou
videoproto
viennarna
viewres
vim Vim: add version 8.1.0338 (#9155) 2018-09-01 08:12:14 -05:00
virtualgl
visit
vizglow
vmatch
voropp
votca-csg
votca-ctp
votca-tools
votca-xtp
vpfft
vpic
vsearch
vt
vtk Fix: bug in VTK package (#9431) 2018-10-08 09:08:50 +02:00
vtkh
vtkm
wannier90 install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
wcslib
wget Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
wgsim
windowswmproto
wireshark
workrave install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
wt
wx
wxpropgrid
x11perf
xapian-core
xauth
xbacklight
xbiff
xbitmaps
xbraid
xcalc
xcb-demo
xcb-proto
xcb-util
xcb-util-cursor
xcb-util-errors
xcb-util-image
xcb-util-keysyms
xcb-util-renderutil
xcb-util-wm
xcb-util-xrm
xclip
xclipboard
xclock
xcmiscproto
xcmsdb
xcompmgr
xconsole
xcursor-themes
xcursorgen
xdbedizzy
xditview
xdm
xdpyinfo
xdriinfo
xedit
xerces-c xerces-c: add variant for transcoder, rework config flags. (#9393) 2018-10-09 15:12:34 -07:00
xev
xextproto
xeyes
xf86bigfontproto
xf86dga
xf86dgaproto
xf86driproto
xf86miscproto
xf86rushproto
xf86vidmodeproto
xfd
xfindproxy
xfontsel
xfs
xfsinfo
xfwp
xgamma
xgc
xhmm
xhost
xineramaproto
xinit
xinput
xios
xkbcomp
xkbdata
xkbevd
xkbprint
xkbutils
xkeyboard-config
xkill
xload
xlogo
xlsatoms
xlsclients
xlsfonts
xmag
xman
xmessage
xmh
xmlf90
xmlto
xmodmap
xmore
xorg-cf-files
xorg-docs
xorg-gtest
xorg-server
xorg-sgml-doctools
xphelloworld
xplor-nih
xplsprinters
xpr
xprehashprinterlist
xprop
xproto
xproxymanagementprotocol
xqilla
xrandr
xrdb
xrefresh
xrootd
xrx
xsbench fix build errors, make mpi variant default and add openmp variant (#9364) 2018-09-26 19:47:51 -06:00
xscope
xsd
xsdk xsdk: reorder develop version statements (#9469) 2018-10-09 14:19:29 -05:00
xsdktrilinos
xset
xsetmode
xsetpointer
xsetroot
xsimd
xsm
xstdcmap
xtensor
xtensor-python
xterm
xtl
xtrans
xtrap
xts
xvidtune
xvinfo
xwd
xwininfo
xwud
xxhash
xz
yajl
yambo
yaml-cpp yaml-cpp: conflict with gcc 4.7 instead of 4.8 (#9371) 2018-09-27 13:37:36 -07:00
yasm
yorick install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
z3
zeromq
zfp
zip
zlib
zoltan zoltan: fix building with Intel compilers (#8985) 2018-08-15 10:40:58 -05:00
zsh
zstd