34 lines
1.2 KiB
Python
34 lines
1.2 KiB
Python
# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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class Libbeagle(AutotoolsPackage):
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"""Beagle performs genotype calling, genotype phasing, imputation of
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ungenotyped markers, and identity-by-descent segment detection."""
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homepage = "https://github.com/beagle-dev/beagle-lib"
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url = "https://github.com/beagle-dev/beagle-lib/archive/beagle_release_2_1_2.tar.gz"
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version('2.1.2', '1107614e86f652f8ee45c1c92f2af3d4')
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depends_on('autoconf', type='build')
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depends_on('automake', type='build')
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depends_on('libtool', type='build')
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depends_on('m4', type='build')
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depends_on('subversion', type='build')
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depends_on('pkgconfig', type='build')
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depends_on('java', type='build')
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def url_for_version(self, version):
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url = "https://github.com/beagle-dev/beagle-lib/archive/beagle_release_{0}.tar.gz"
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return url.format(version.underscored)
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def setup_environment(self, spack_env, run_env):
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prefix = self.prefix
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run_env.prepend_path('BEAST_LIB', prefix.lib)
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