33 lines
975 B
Python
33 lines
975 B
Python
# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other
|
|
# Spack Project Developers. See the top-level COPYRIGHT file for details.
|
|
#
|
|
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
|
|
|
|
from spack import *
|
|
|
|
|
|
class Freebayes(MakefilePackage):
|
|
"""Bayesian haplotype-based genetic polymorphism discovery and
|
|
genotyping."""
|
|
|
|
homepage = "https://github.com/ekg/freebayes"
|
|
git = "https://github.com/ekg/freebayes.git"
|
|
|
|
version('1.1.0', commit='39e5e4bcb801556141f2da36aba1df5c5c60701f',
|
|
submodules=True)
|
|
|
|
depends_on('cmake', type='build')
|
|
depends_on('zlib')
|
|
|
|
parallel = False
|
|
|
|
def edit(self, spec, prefix):
|
|
makefile = FileFilter('Makefile')
|
|
b = prefix.bin
|
|
makefile.filter('cp bin/freebayes bin/bamleftalign /usr/local/bin/',
|
|
'cp bin/freebayes bin/bamleftalign {0}'.format(b))
|
|
|
|
@run_before('install')
|
|
def make_prefix_dot_bin(self):
|
|
mkdir(prefix.bin)
|