55 lines
1.7 KiB
Python
55 lines
1.7 KiB
Python
# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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import archspec
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from spack.package import *
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class Blast2go(Package):
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"""Blast2GO is a bioinformatics platform for high-quality functional
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annotation and analysis of genomic datasets."""
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homepage = "https://www.blast2go.com/"
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version("5.2.5", sha256="c37aeda25f96ac0553b52da6b5af3167d50671ddbfb3b39bcb11afe5d0643891")
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for t in set(
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[str(x.family) for x in archspec.cpu.TARGETS.values() if str(x.family) != "x86_64"]
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):
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conflicts("target={0}:".format(t), msg="blast2go is available x86_64 only")
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depends_on("bash", type="build")
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depends_on("blast-plus", type="run")
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depends_on("java", type="build")
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def url_for_version(self, version):
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fname = "Blast2GO_unix_{0}.zip".format(version.underscored)
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return "http://resources.biobam.com/software/blast2go/nico/%s" % fname
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def install(self, spec, prefix):
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# blast2go install script prompts for the following:
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#
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# continue? [o/c] => o
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# installation prefix => prefix
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# desktop icon [y/n] => n
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# run blast2go? [y/n] => n
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config_input_file = "spack-config.in"
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config_input_data = [
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"o\n",
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prefix.bin + "\n",
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"n\n",
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"n\n",
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]
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with open(config_input_file, "w") as f:
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f.writelines(config_input_data)
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with open(config_input_file, "r") as f:
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bash = which("bash")
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bash("Blast2GO_unix_%s.sh" % self.version.underscored, input=f)
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