7b9f8abce5
Add language dependencies `c`, `cxx`, and `fortran`. These `depends_on` statements are auto-generated based on file extensions found in source tarballs/zipfiles. The `# generated` comment can be removed by package maintainers after validating correctness.
30 lines
1.0 KiB
Python
30 lines
1.0 KiB
Python
# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack.package import *
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class Ngmlr(CMakePackage):
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"""Ngmlr is a long-read mapper designed to align PacBilo or Oxford
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Nanopore to a reference genome with a focus on reads that span
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structural variations."""
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homepage = "https://github.com/philres/ngmlr"
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url = "https://github.com/philres/ngmlr/archive/v0.2.5.tar.gz"
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license("MIT")
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version("0.2.7", sha256="5126a6b3e726cac0da0713883daac688f38587f118428247a9a3ace5a55b29aa")
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version("0.2.5", sha256="719944a35cc7ff9c321eedbf3385a7375ce2301f609b3fd7be0a850cabbb028b")
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depends_on("c", type="build") # generated
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depends_on("cxx", type="build") # generated
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depends_on("zlib-api", type="link")
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depends_on("sse2neon", when="target=aarch64:")
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patch("for_aarch64.patch", when="target=aarch64:")
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patch("for_va_list.patch")
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