33 lines
1.2 KiB
Python
33 lines
1.2 KiB
Python
# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack.package import *
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class RPegas(RPackage):
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"""Population and Evolutionary Genetics Analysis System.
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Functions for reading, writing, plotting, analysing, and manipulating
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allelic and haplotypic data, including from VCF files, and for the analysis
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of population nucleotide sequences and micro-satellites including
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coalescent analyses, linkage disequilibrium, population structure (Fst,
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Amova) and equilibrium (HWE), haplotype networks, minimum spanning tree and
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network, and median-joining networks."""
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cran = "pegas"
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maintainers("dorton21")
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license("GPL-2.0-or-later")
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version("1.2", sha256="9d39f3937c09ea6e2189949a23879bb366f5ca1df3a6aac411c7d2b73837ad55")
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version("1.1", sha256="87ba91a819496dfc3abdcc792ff853a6d49caae6335598a24c23e8851505ed59")
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version("0.14", sha256="7df90e6c4a69e8dbed2b3f68b18f1975182475bf6f86d4159256b52fd5332053")
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depends_on("r@3.2.0:", type=("build", "run"))
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depends_on("r-ape@5.3-11:", type=("build", "run"))
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depends_on("r-adegenet", type=("build", "run"), when="@:0.14")
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