bafd84e191
* Switch http to https where latter exists * Hopefully restore original permissions * Add URL updates after include the -L curl option * Manual corrections to select URL format strings
28 lines
1.0 KiB
Python
28 lines
1.0 KiB
Python
# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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class Cufflinks(Package):
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"""Cufflinks assembles transcripts, estimates their abundances, and tests
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for differential expression and regulation in RNA-Seq samples."""
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homepage = "https://cole-trapnell-lab.github.io/cufflinks"
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url = "https://cole-trapnell-lab.github.io/cufflinks/assets/downloads/cufflinks-2.2.1.Linux_x86_64.tar.gz"
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version('2.2.1', sha256='39f812452cae26462e5d2671d38104d9e8ef30aaf9ab6dea8ca57f50f46448e4')
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def install(self, spec, prefix):
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mkdirp(prefix.bin)
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install('cuffcompare', prefix.bin)
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install('cuffdiff', prefix.bin)
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install('cufflinks', prefix.bin)
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install('cuffmerge', prefix.bin)
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install('cuffnorm', prefix.bin)
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install('cuffquant', prefix.bin)
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install('gffread', prefix.bin)
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install('gtf_to_sam', prefix.bin)
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