62927654dd
We'd like to use a consistent checksum scheme everywhere so that we can:
a) incorporate archive checksums into our specs and have a
consistent hashing algorithm across all specs.
b) index mirrors with a consistent type of checksum, and not one that
is dependent on how spack packages are written.
- [x] convert existing md5, sha224, sha512, sha1 checksums to sha256
38 lines
1.4 KiB
Python
38 lines
1.4 KiB
Python
# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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class Breseq(AutotoolsPackage):
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"""breseq is a computational pipeline for finding mutations relative to
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a reference sequence in short-read DNA re-sequencing data for haploid
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microbial-sized genomes."""
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homepage = "http://barricklab.org/breseq"
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url = "https://github.com/barricklab/breseq/archive/v0.31.1.tar.gz"
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version('0.33.2', sha256='c698d2d25cc7ed251ff916343a8c04f79b5540281288cb7c955f458255ac21de')
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version('0.33.1', sha256='e24a50e254ad026c519747313b9e42bbeb32bd766a6a06ed369bd5b9dc50e84d')
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version('0.31.1', sha256='ffc8a7f40a5ad918234e465e9d4cdf74be02fd29091b13720c2cab1dc238cf5c')
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depends_on('autoconf', type='build')
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depends_on('automake', type='build')
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depends_on('libtool', type='build')
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depends_on('m4', type='build')
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depends_on('zlib', type='link')
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depends_on('bedtools2', type='run')
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depends_on('r', type='run')
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conflicts('%gcc@:4.8')
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conflicts('%clang@:3.3')
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def setup_environment(self, spack_env, run_env):
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spack_env.set('LDFLAGS',
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"-L{0}".format(self.spec['zlib'].prefix.lib))
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spack_env.set('CFLAGS',
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"-I{0}".format(self.spec['zlib'].prefix.include))
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