62927654dd
We'd like to use a consistent checksum scheme everywhere so that we can:
a) incorporate archive checksums into our specs and have a
consistent hashing algorithm across all specs.
b) index mirrors with a consistent type of checksum, and not one that
is dependent on how spack packages are written.
- [x] convert existing md5, sha224, sha512, sha1 checksums to sha256
34 lines
1.2 KiB
Python
34 lines
1.2 KiB
Python
# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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class SoapdenovoTrans(MakefilePackage):
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"""SOAPdenovo-Trans is a de novo transcriptome assembler basing on the
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SOAPdenovo framework, adapt to alternative splicing and different
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expression level among transcripts."""
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homepage = "http://soap.genomics.org.cn/SOAPdenovo-Trans.html"
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url = "https://github.com/aquaskyline/SOAPdenovo-Trans/archive/1.0.4.tar.gz"
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version('1.0.4', sha256='378a54cde0ebe240fb515ba67197c053cf95393645c1ae1399b3a611be2a9795')
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build_directory = 'src'
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def edit(self, spec, prefix):
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with working_dir(self.build_directory):
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makefile = FileFilter('Makefile')
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makefile.filter('CFLAGS= -O3 -fomit-frame-pointer -static',
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'CFLAGS= -O3 -fomit-frame-pointer')
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def build(self, spec, prefix):
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with working_dir(self.build_directory):
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make()
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make('127mer=1', parallel=False)
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def install(self, spec, prefix):
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install_tree('.', prefix.bin)
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