Stephen McDowell be2be8c70e fix armadillo macro expansions (#5268) ...

* fix armadillo macro expansions

- most compilers `#define linux 1`
    - armadillo does raw pasting of include directories in code
    - this means macro expansion of `linux-x86_64` -> `1-x86_64`
- new version, previous download url seems broken
- lib64 instead of lib?
    - needs verification, was required for intel, works for others

* flake8: two spaces is modules, one for classes

* add some explanation of how the patch works

* use p1 patch file with -U0 to prepend undef linux

* armadillo v8.100.1

2017-09-10 16:04:02 -10:00

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foam-extend

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folly

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font-adobe-75dpi

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font-adobe-100dpi

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font-adobe-utopia-75dpi

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font-adobe-utopia-100dpi

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font-adobe-utopia-type1

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font-alias

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font-arabic-misc

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font-bh-75dpi

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font-bh-100dpi

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font-bh-lucidatypewriter-75dpi

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font-bh-lucidatypewriter-100dpi

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font-bh-ttf

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font-bh-type1

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font-bitstream-75dpi

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font-bitstream-100dpi

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font-bitstream-speedo

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font-bitstream-type1

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font-cronyx-cyrillic

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font-cursor-misc

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font-daewoo-misc

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font-dec-misc

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font-ibm-type1

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font-isas-misc

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font-jis-misc

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font-micro-misc

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font-misc-cyrillic

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font-misc-ethiopic

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font-misc-meltho

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font-misc-misc

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font-mutt-misc

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font-schumacher-misc

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font-screen-cyrillic

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font-sony-misc

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font-sun-misc

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font-util

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font-winitzki-cyrillic

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font-xfree86-type1

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fontcacheproto

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fontconfig

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fontsproto

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fonttosfnt

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freebayes

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freetype

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fseq

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fslsfonts

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fstobdf

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funhpc

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gapcloser

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gapfiller

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gasnet

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gaussian

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gawk

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gblocks

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gcc

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gccmakedep

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gccxml

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gconf

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gdal

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gdb

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gdbm

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gdk-pixbuf

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geant4

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gearshifft

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gemmlowp

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genemark-et

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genometools

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geos

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gettext

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gflags

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ghostscript

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ghostscript-fonts

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giflib

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git

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git-lfs

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gl2ps

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glew

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glib

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glm

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global

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2017-09-06 17:44:16 -10:00

globalarrays

Globalarrays: Adding ENABLE_I8 variant (#5249)

2017-08-31 15:14:50 -10:00

globus-toolkit

Update copyright notices for 2017 (#5295)

2017-09-06 17:44:16 -10:00

glog

Change glog from Autotools to CMakePackage (#5323)

2017-09-10 13:22:47 -10:00

glpk

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2017-09-06 17:44:16 -10:00

glproto

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gmake

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gmap-gsnap

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gmime

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gmp

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gmsh

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gnat

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gnu-prolog

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gnupg

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gnuplot

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gnutls

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go

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go-bootstrap

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gobject-introspection

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googletest

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gource

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gperf

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gperftools

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grackle

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gradle

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grandr

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graphlib

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graphmap

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graphviz

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grib-api

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groff

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gromacs

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gsl

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gtkorvo-atl

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gtkorvo-cercs-env

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gtkorvo-dill

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gtkorvo-enet

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gtkplus

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gts

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guile

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h5hut

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h5part

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h5utils

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h5z-zfp

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hadoop

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hapcut2

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haploview

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harfbuzz

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harminv

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hdf

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hdf5

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hdf5-blosc

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help2man

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hepmc

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heppdt

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highfive

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highwayhash

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hmmer

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hoomd-blue

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hpccg

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hpctoolkit

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hpctoolkit-externals

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hpl

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hpx

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hpx5

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hsakmt

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hstr

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htop

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htslib

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httpie

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hub

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hunspell

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hwloc

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hybpiper

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hydra

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hypre

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ibmisc

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iceauth

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icedtea

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icet

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ico

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icu4c

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id3lib

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idba

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igraph

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ilmbase

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image-magick

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imake

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impute2

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infernal

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inputproto

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intel

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intel-daal

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intel-gpu-tools

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intel-ipp

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intel-mkl

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intel-mpi

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intel-parallel-studio

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intel-tbb

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intltool

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2017-09-06 17:44:16 -10:00

ior

Chnage IOR to AutotoolsPackage; remove hard-coded mpicc path (#5318)

2017-09-10 13:17:54 -10:00

iozone

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2017-09-06 17:44:16 -10:00

ipopt

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isaac

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isaac-server

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isl

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itstool

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itsx

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jags

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jansson

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jasper

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jdk

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jemalloc

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jmol

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jq

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json-c

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jsoncpp

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judy

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julia

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kahip

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kaldi

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kallisto

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kbproto

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kdiff3

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kealib

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kentutils

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kmergenie

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kokkos

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kripke

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2017-09-06 17:44:16 -10:00

lammps

lammps: version bump, switch to cmake (#5313)

2017-09-10 13:21:38 -10:00

last

Update copyright notices for 2017 (#5295)

2017-09-06 17:44:16 -10:00

latte

latte: initial commit (#5315)

2017-09-10 13:19:50 -10:00

launchmon

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lbann

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lbxproxy

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lcals

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lcms

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legion

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leveldb

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lftp

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libaec

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libaio

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libapplewm

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libarchive

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libassuan

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libatomic-ops

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libbeagle

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libbsd

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libbson

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libcanberra

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libcap

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libcerf

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libcircle

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libconfig

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libctl

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libdivsufsort

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libdmx

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libdrm

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libdwarf

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libedit

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libelf

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libemos

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libepoxy

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libevent

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libevpath

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libfabric

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libffi

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libffs

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libfontenc

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libfs

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libgcrypt

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libgd

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libgit2

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libgpg-error

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2017-09-06 17:44:16 -10:00

libgpuarray

Libgpuarray requires CMake 3.0 or higher (#5326)

2017-09-10 10:06:13 +02:00

libgtextutils

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2017-09-06 17:44:16 -10:00

libharu

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libhio

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libice

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libiconv

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libint

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libjpeg

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libjpeg-turbo

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libksba

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liblbxutil

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libmatheval

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libmesh

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libmng

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libmongoc

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libmonitor

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libnbc

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libogg

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liboldx

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libpciaccess

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libpfm4

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libpipeline

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libpng

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libpsl

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libpthread-stubs

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libquo

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libsigsegv

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libsm

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libsodium

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libspatialindex

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libsplash

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libssh2

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libsvm

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libszip

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libtermkey

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libtiff

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libtool

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libunistring

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libunwind

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libuuid

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libuv

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libvorbis

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libvterm

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libwebsockets

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libwindowswm

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libx11

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libxau

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libxaw

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libxaw3d

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libxc

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libxcb

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libxcomposite

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libxcursor

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libxdamage

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libxdmcp

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libxevie

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libxext

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libxfixes

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libxfont

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libxfont2

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libxfontcache

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libxft

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libxi

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libxinerama

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libxkbfile

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libxkbui

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libxml2

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libxmu

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libxp

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libxpm

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libxpresent

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libxprintapputil

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libxprintutil

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libxrandr

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libxrender

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libxres

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libxscrnsaver

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libxshmfence

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libxslt

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libxsmm

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libxstream

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libxt

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libxtrap

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libxtst

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libxv

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libxvmc

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libxxf86dga

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libxxf86misc

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libxxf86vm

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libyogrt

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libzip

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2017-09-06 17:44:16 -10:00

likwid

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2017-09-06 17:44:16 -10:00

linux-headers

Update copyright notices for 2017 (#5295)

2017-09-06 17:44:16 -10:00

listres

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2017-09-06 17:44:16 -10:00

llvm

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2017-09-06 17:44:16 -10:00

llvm-lld

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2017-09-06 17:44:16 -10:00

llvm-openmp-ompt

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2017-09-06 17:44:16 -10:00

lmdb

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lmod

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lndir

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log4cxx

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lrslib

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lrzip

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2017-09-06 17:44:16 -10:00

lua

Update copyright notices for 2017 (#5295)

2017-09-06 17:44:16 -10:00

lua-bitlib

add neovim package with deps (#5260)

2017-09-04 23:34:21 -10:00

lua-jit

Update copyright notices for 2017 (#5295)

2017-09-06 17:44:16 -10:00

lua-lpeg

add neovim package with deps (#5260)

2017-09-04 23:34:21 -10:00

lua-luafilesystem

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2017-09-06 17:44:16 -10:00

lua-luaposix

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2017-09-06 17:44:16 -10:00

lua-mpack

add neovim package with deps (#5260)

2017-09-04 23:34:21 -10:00

luit

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2017-09-06 17:44:16 -10:00

lulesh

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lwgrp

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lwm2

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lz4

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lzma

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lzo

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m4

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mad-numdiff

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mafft

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magics

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magma

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makedepend

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mallocmc

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man-db

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mariadb

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matio

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matlab

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maven

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2017-09-06 17:44:16 -10:00

maverick

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mawk

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mbedtls

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mcl

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mdtest

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meep

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memaxes

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2017-09-06 17:44:16 -10:00

meme

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mercurial

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mesa

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2017-09-06 17:44:16 -10:00

mesa-glu

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2017-09-06 17:44:16 -10:00

meshkit

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2017-09-06 17:44:16 -10:00

meson

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mesquite

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metis

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mfem

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2017-09-06 17:44:16 -10:00

microbiomeutil

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2017-09-06 17:44:16 -10:00

miniaero

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2017-09-06 17:44:16 -10:00

miniamr

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miniconda2

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miniconda3

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minife

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minighost

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minigmg

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minimd

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minismac2d

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minixyce

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mitofates

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mitos

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mkfontdir

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mkfontscale

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2017-09-06 17:44:16 -10:00

mlhka

mlhka: new package (#5231)

2017-09-07 07:34:34 -10:00

moab

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2017-09-06 17:44:16 -10:00

molcas

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mono

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mosh

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mothur

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mozjs

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mpc

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mpe2

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mpest

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mpfr

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mpibash

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mpiblast

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mpich

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mpifileutils

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mpileaks

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mpip

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mpir

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mpix-launch-swift

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mrbayes

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mrnet

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msgpack-c

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multiverso

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mummer

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mumps

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munge

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muparser

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2017-09-06 17:44:16 -10:00

muscle

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muse

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muster

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mvapich2

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mxml

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nag

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nalu

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namd

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nano

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nanoflann

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nasm

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nauty

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nccl

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nccmp

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ncdu

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ncftp

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ncl

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nco

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ncurses

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ncview

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ndiff

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nekbone

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2017-09-06 17:44:16 -10:00

neovim

add neovim package with deps (#5260)

2017-09-04 23:34:21 -10:00

netcdf

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2017-09-06 17:44:16 -10:00

netcdf-cxx

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netcdf-cxx4

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netcdf-fortran

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netgauge

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netgen

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netlib-lapack

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netlib-scalapack

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nettle

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nextflow

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nfft

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nginx

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ngmlr

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ninja

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ninja-fortran

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nmap

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2017-09-06 17:44:16 -10:00

node-js

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notmuch

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npb

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npm

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npth

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nspr

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numdiff

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nut

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2017-09-06 17:44:16 -10:00

nwchem

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ocaml

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oce

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oclock

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octave

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octave-splines

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octopus

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of-adios-write

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ompss

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2017-09-06 17:44:16 -10:00

ompt-openmp

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oniguruma

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ont-albacore

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2017-09-06 17:44:16 -10:00

opari2

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2017-09-06 17:44:16 -10:00

openbabel

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openblas

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opencoarrays

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opencv

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openexr

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openfoam-com

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openfoam-org

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openfst

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2017-09-06 17:44:16 -10:00

openjpeg

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openmc

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openmpi

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openscenegraph

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openspeedshop

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openssh

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openssl

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2017-09-06 17:44:16 -10:00

opium

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opus

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orfm

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osu-micro-benchmarks

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otf

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otf2

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p4est

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pacbio-daligner

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pacbio-damasker

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pacbio-dazz-db

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pacbio-dextractor

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pagit

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pagmo

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paml

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panda

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pango

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papi

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paradiseo

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parallel

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parallel-netcdf

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paraver

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paraview

Paraview requires CMake version 3.3 or higher (#5317)

2017-09-10 10:09:05 +02:00

parmetis

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parmgridgen

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parpack

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parsimonator

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partitionfinder

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patch

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patchelf

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pathfinder

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pax-utils

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pbmpi

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pcma

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pcre

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pcre2

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pdsh

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pdt

Improve PDToolkit support for different compilers (#5322)

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pegtl

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pennant

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perl

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perl-dbfile

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perl-dbi

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perl-extutils-makemaker

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perl-intervaltree

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perl-math-cdf

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perl-module-build

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perl-star-fusion

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perl-term-readkey

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perl-uri-escape

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perl-xml-parser

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petsc

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pexsi

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pfft

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pflotran

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pgdspider

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pgi

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phasta

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phylip

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picard

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pidx

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pigz

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piranha

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pixman

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pkg-config

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pkgconf

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planck-likelihood

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plink

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plumed

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pmgr-collective

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pnfft

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pngwriter

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poamsa

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pocl

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polymake

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porta

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portage

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postgresql

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ppl

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prank

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presentproto

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preseq

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price

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primer3

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printproto

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probconsrna

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proj

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protobuf

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proxymngr

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pruners-ninja

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psi4

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pstreams

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pugixml

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pumi

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pvm

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py-3to2

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py-4suite-xml

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py-abipy

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py-alabaster

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py-apache-libcloud

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py-apipkg

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py-appdirs

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py-appnope

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py-apscheduler

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py-argcomplete

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py-argparse

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py-ase

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py-asn1crypto

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py-astroid

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py-astropy

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py-attrs

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py-autopep8

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py-babel

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py-backports-abc

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py-backports-shutil-get-terminal-size

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py-backports-ssl-match-hostname

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py-basemap

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py-beautifulsoup4

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py-binwalk

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py-biom-format

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py-biopython

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py-bleach

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py-blessings

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py-bokeh

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py-boltons

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py-bottleneck

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py-brian

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py-brian2

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py-cclib

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py-cdat-lite

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py-cdo

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py-certifi

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py-cffi

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py-chardet

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py-click

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py-colorama

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py-colormath

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py-configparser

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py-counter

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py-coverage

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py-cpuinfo

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py-cryptography

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py-csvkit

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py-current

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py-cutadapt

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py-cycler

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py-cython

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py-dask

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py-dateutil

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py-dbf

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py-decorator

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py-deeptools

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py-dev

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py-dill

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py-docutils

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py-doxypy

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py-doxypypy

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py-dryscrape

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py-dxchange

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py-dxfile

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py-easybuild-easyblocks

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py-easybuild-easyconfigs

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py-easybuild-framework

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py-edffile

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py-elasticsearch

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py-elephant

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py-emcee

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py-entrypoints

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py-enum34

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py-epydoc

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py-et-xmlfile

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py-execnet

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py-fastaindex

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py-fasteners

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py-faststructure

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py-fiscalyear

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py-flake8

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py-flask

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py-flexx

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py-funcsigs

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py-functools32

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py-future

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py-futures

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py-genders

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py-genshi

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py-git2

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py-git-review

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py-gnuplot

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py-griddataformats

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py-guidata

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py-guiqwt

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py-h5py

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py-html2text

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py-html5lib

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py-httpbin

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py-hypothesis

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py-idna

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py-igraph

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py-imagesize

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py-iminuit

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py-importlib

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py-ipaddress

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py-ipdb

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py-ipykernel

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py-ipython

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py-ipython-genutils

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py-ipywidgets

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py-itsdangerous

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py-jdcal

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py-jedi

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py-jinja2

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py-joblib

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py-jpype

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py-jsonschema

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py-junit-xml

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py-jupyter-client

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py-jupyter-console

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py-jupyter-core

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py-jupyter-notebook

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py-keras

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py-latexcodec

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py-lazy

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py-lazyarray

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py-libconf

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py-line-profiler

add package py-line-profiler (#5291)

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py-lit

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py-lmfit

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py-lockfile

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py-logilab-common

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py-lxml

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py-lzstring

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py-macholib

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py-machotools

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py-macs2

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py-mako

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py-markdown

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py-markupsafe

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py-matplotlib

Fix matplotlib build issue with intel compiler (#5321)

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py-mccabe

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py-mdanalysis

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py-meep

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py-misopy

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py-mistune

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py-mock

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py-mongo

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py-monotonic

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py-monty

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py-mpi4py

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py-mpmath

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py-multiprocess

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py-multiqc

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py-mx

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py-myhdl

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py-mysqldb1

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py-nbconvert

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py-nbformat

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python

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qt

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r-evaluate

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r-foreach

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r-formatr

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r-formula

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r-gdata

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r-ggmap

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r-glmnet

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r-gmodels

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r-gmp

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r-googlevis

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r-gridbase

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r-gtable

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r-hexbin

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r-highr

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r-htmltools

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r-htmlwidgets

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r-httpuv

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r-httr

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r-igraph

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r-influencer

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r-inline

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r-ipred

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r-irdisplay

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r-irkernel

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r-irlba

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r-iterators

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r-jpeg

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r-jsonlite

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r-kernlab

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r-knitr

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r-labeling

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r-laplacesdemon

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r-lattice

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r-lava

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r-lazyeval

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r-leaflet

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r-leaps

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r-learnbayes

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r-lme4

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r-lmtest

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r-lpsolve

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r-lubridate

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r-magic

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r-mapproj

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r-maps

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r-maptools

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r-markdown

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r-mass

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r-matrix

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r-matrixmodels

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r-mda

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r-memoise

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r-mgcv

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r-mime

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r-minqa

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r-mlbench

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r-modelmetrics

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r-modeltools

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r-multcomp

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r-munsell

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r-ncdf4

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r-network

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r-nlme

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r-nnet

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r-np

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r-numderiv

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r-openssl

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r-packrat

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r-pacman

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r-party

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r-partykit

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r-permute

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r-pkgmaker

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r-plotrix

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r-pls

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r-plyr

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r-png

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r-prabclus

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r-praise

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r-prodlim

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r-proto

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r-pryr

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r-raster

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r-rcpp

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r-registry

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r-repr

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r-reshape2

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r-rmarkdown

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r-sandwich

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r-scales

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r-segmented

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r-shiny

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r-snow

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r-stanheaders

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r-statnet-common

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r-stringi

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r-stringr

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r-strucchange

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r-survey

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r-survival

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r-testit

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r-testthat

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r-threejs

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r-tibble

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r-trust

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r-uuid

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r-vegan

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r-whisker

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r-xml

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r-xtable

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r-xts

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r-yaml

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r-zoo

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raft

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raja

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random123

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ravel

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raxml

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ray

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rdp-classifier

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readline

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recordproto

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redundans

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relion

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rempi

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rename

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rendercheck

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renderproto

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resourceproto

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revbayes

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rgb

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rhash

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rockstar

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root

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rsync

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rtags

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rtax

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ruby

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rust

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rust-bindgen

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sabre

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salmon

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samtools

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sbt

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scala

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scalasca

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scons

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scorec-core

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scorep

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scotch

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scr

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screen

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scripts

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sctk

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sdl2

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sdl2-image

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sed

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seqprep

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seqtk

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serf

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sessreg

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setxkbmap

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sga

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shapeit

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shared-mime-info

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shiny-server

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shortstack

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showfont

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sickle

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signalp

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silo

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simplemoc

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simul

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simulationio

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singularity

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slepc

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slurm

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smalt

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smc

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smproxy

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snakemake

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snap

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snap-berkeley

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snappy

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snbone

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sniffles

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snptest

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soap2

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soapindel

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soapsnp

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somatic-sniper

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sortmerna

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sowing

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sox

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spades

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spark

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sparsehash

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sparta

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spdlog

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spectrum-mpi

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speex

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sph2pipe

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spherepack

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spindle

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spot

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sqlite

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sspace-longread

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sspace-standard

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sst-dumpi

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sst-macro

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stacks

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staden-io-lib

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star

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star-ccm-plus

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stat

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stc

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stream

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stress

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stringtie

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structure

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sublime-text

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subread

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subversion

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suite-sparse

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sumaclust

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sundials

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superlu

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superlu-dist

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superlu-mt

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swarm

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swiftsim

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swig

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symengine

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sympol

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sz

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tabix

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talloc

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tar

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task

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taskd

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tau

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tcl

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tcoffee

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tealeaf

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tetgen

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tethex

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texinfo

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texlive

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the-platinum-searcher

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the-silver-searcher

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thrift

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tig

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tinyxml

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tinyxml2

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tk

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tmalign

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tmux

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tmuxinator

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tophat

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tppred

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transabyss

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transdecoder

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transposome

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transset

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trapproto

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tree

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triangle

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trilinos

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trimgalore

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trimmomatic

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turbine

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turbomole

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tut

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twm

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uberftp

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udunits2

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uncrustify

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unibilium

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unison

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units

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unixodbc

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usearch

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util-linux

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util-macros

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uuid

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valgrind

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vampirtrace

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varscan

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vc

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vcftools

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vcsh

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vdt

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vecgeom

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veclibfort

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vegas2

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velvet

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videoproto

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viennarna

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viewres

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vim

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virtualgl

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visit

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vizglow

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vmatch

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voropp

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votca-csg

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votca-moo

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votca-tools

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vpfft

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vpic

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vsearch

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vtk

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wannier90

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wget

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windowswmproto

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wt

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wx

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wxpropgrid

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xapian-core

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xauth

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xbacklight

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xbiff

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xbitmaps

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xcalc

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xcb-demo

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xcb-proto

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xcb-util

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xcb-util-cursor

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xcb-util-errors

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xcb-util-image

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xcb-util-keysyms

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xcb-util-renderutil

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xcb-util-wm

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xclipboard

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xclock

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xcmiscproto

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xcmsdb

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xcompmgr

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xconsole

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xcursor-themes

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xcursorgen

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xdbedizzy

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xditview

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xdm

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xdpyinfo

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xdriinfo

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xedit

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xerces-c

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xev

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xextproto

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xeyes

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xf86dga

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xf86dgaproto

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xf86driproto

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xf86miscproto

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xf86rushproto

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xf86vidmodeproto

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xfd

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xfindproxy

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xfontsel

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xfs

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xfsinfo

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xfwp

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xgamma

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xgc

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xhost

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xineramaproto

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xinit

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xinput

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xkbcomp

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xkbdata

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xkbevd

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xlsfonts

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xmag

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xmlto

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xmore

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xorg-cf-files

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xphelloworld

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xsbench

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xsdk

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xsdktrilinos

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xset

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xsetmode

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xterm

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xtrans

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xtrap

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xts

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xvidtune

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xvinfo

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xwd

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yaml-cpp

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yasm

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yorick

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zeromq

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zip

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zlib

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zoltan

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zstd

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