eea786f4e8
- remove the old LGPL license headers from all files in Spack - add SPDX headers to all files - core and most packages are (Apache-2.0 OR MIT) - a very small number of remaining packages are LGPL-2.1-only
30 lines
1012 B
Python
30 lines
1012 B
Python
# Copyright 2013-2018 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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class Stacks(AutotoolsPackage):
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"""Stacks is a software pipeline for building loci from short-read
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sequences, such as those generated on the Illumina platform."""
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homepage = "http://catchenlab.life.illinois.edu/stacks/"
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url = "http://catchenlab.life.illinois.edu/stacks/source/stacks-1.46.tar.gz"
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version('1.46', '18b0568a4bba44fb4e5be0eb7ee2c08d')
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variant('sparsehash', default=True, description='Improve Stacks memory usage with SparseHash')
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depends_on('perl', type=('build', 'run'))
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depends_on('sparsehash', when='+sparsehash')
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def configure_args(self):
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args = []
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if '+sparsehash' in self.spec:
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args.append('--enable-sparsehash')
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else:
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args.append('--disable-sparsehash')
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return args
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