a8ccb8e116
- [x] add `concretize.lp`, `spack.yaml`, etc. to licensed files
- [x] update all licensed files to say 2013-2021 using
`spack license update-copyright-year`
- [x] appease mypy with some additions to package.py that needed
for oneapi.py
43 lines
1.8 KiB
Python
43 lines
1.8 KiB
Python
# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
|
|
# Spack Project Developers. See the top-level COPYRIGHT file for details.
|
|
#
|
|
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
|
|
|
|
from spack import *
|
|
|
|
|
|
class PyVcfKit(PythonPackage):
|
|
"""VCF-kit is a command-line based collection of utilities for performing
|
|
analysis on Variant Call Format (VCF) files."""
|
|
|
|
homepage = "https://github.com/AndersenLab/VCF-kit"
|
|
url = "https://github.com/AndersenLab/VCF-kit/archive/0.1.6.tar.gz"
|
|
|
|
version('0.1.6', sha256='4865414ac9dc6996c0baeefadf1d528c28e6d0c3cc3dbdc28a2cdc6e06212428')
|
|
|
|
depends_on('python@2.7:2.8', type=('build', 'run'))
|
|
depends_on('py-setuptools', type='build')
|
|
depends_on('py-awesome-slugify', type=('build', 'run'))
|
|
depends_on('py-matplotlib', type=('build', 'run'))
|
|
depends_on('py-scipy', type=('build', 'run'))
|
|
depends_on('py-numpy', type=('build', 'run'))
|
|
depends_on('py-cython@0.24.1:', type='build')
|
|
depends_on('py-cyvcf2@0.6.5:', type=('build', 'run'))
|
|
depends_on('py-docopt', type=('build', 'run'))
|
|
depends_on('py-biopython', type=('build', 'run'))
|
|
depends_on('py-yahmm@1.1.2', type=('build', 'run'))
|
|
depends_on('py-clint', type=('build', 'run'))
|
|
depends_on('py-requests', type=('build', 'run'))
|
|
depends_on('py-networkx@1.11', type=('build', 'run'))
|
|
depends_on('py-intervaltree@2.1.0', type=('build', 'run'))
|
|
depends_on('py-tabulate', type=('build', 'run'))
|
|
depends_on('py-jinja2', type=('build', 'run'))
|
|
|
|
depends_on('bwa@0.7.12:', type='run')
|
|
depends_on('samtools@1.3:', type='run')
|
|
depends_on('bcftools@1.3:', type='run')
|
|
depends_on('blast-plus@2.2.31:', type='run')
|
|
depends_on('muscle@3.8.31:', type='run')
|
|
depends_on('primer3', type='run')
|
|
depends_on('vcftools', type='run')
|