55 lines
2.2 KiB
Python
55 lines
2.2 KiB
Python
##############################################################################
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# Copyright (c) 2013-2018, Lawrence Livermore National Security, LLC.
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# Produced at the Lawrence Livermore National Laboratory.
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#
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# This file is part of Spack.
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# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
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# LLNL-CODE-647188
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#
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# For details, see https://github.com/spack/spack
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# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
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#
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# This program is free software; you can redistribute it and/or modify
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# it under the terms of the GNU Lesser General Public License (as
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# published by the Free Software Foundation) version 2.1, February 1999.
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#
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# This program is distributed in the hope that it will be useful, but
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# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
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# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
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# conditions of the GNU Lesser General Public License for more details.
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#
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# You should have received a copy of the GNU Lesser General Public
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# License along with this program; if not, write to the Free Software
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# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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##############################################################################
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from spack import *
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class DialignTx(MakefilePackage):
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"""DIALIGN-TX: greedy and progressive approaches for segment-based
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multiple sequence alignment"""
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homepage = "http://dialign-tx.gobics.de/"
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url = "http://dialign-tx.gobics.de/DIALIGN-TX_1.0.2.tar.gz"
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version('1.0.2', '8ccfb1d91136157324d1e513f184ca29')
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build_directory = 'source'
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conflicts('%gcc@6:')
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def edit(self, spec, prefix):
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with working_dir(self.build_directory):
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makefile = FileFilter('Makefile')
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makefile.filter(' -march=i686 ', ' ')
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makefile.filter('CC=gcc', 'CC=%s' % spack_cc)
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def install(self, spec, prefix):
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mkdirp(prefix.bin)
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with working_dir(self.build_directory):
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install('dialign-tx', prefix.bin)
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# t-coffee recognizes as dialign-t
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install('dialign-tx', join_path(prefix.bin, 'dialign-t'))
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patch('dialign-1-0-2-gcc-5-4-0.patch', when='%gcc@5.4.0')
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