8183210e59
* generax: adding new package generax * muscle5: adding new package muscle5 * py-custom-inherit: adding new package py-custom-inherit * py-ete3: adding new package py-ete3 * py-itolapi: adding new package py-itolapi * py-opentree: adding new package py-opentree * py-pypng: adding new package py-pypng * py-toyplot: adding new package py-toyplot * py-toytree: adding new package py-toytree * py-pastml: adding new package py-pastml * raxml-ng: adding new version 1.1.0 * py-topiary: adding new package py-topiary * generax: adding master branch version generax: adding version 2.0.1 generax: add mpi variant * py-topiary: add main * generax: correcting commit for 2.0.1 * Update var/spack/repos/builtin/packages/py-itolapi/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/py-opentree/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * py-topiary-asr: rename package, requested changes. * Update var/spack/repos/builtin/packages/py-topiary-asr/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> --------- Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
37 lines
1.2 KiB
Python
37 lines
1.2 KiB
Python
# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack.package import *
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class RaxmlNg(CMakePackage):
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"""RAxML-NG is a phylogenetic tree inference tool which uses
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maximum-likelihood (ML) optimality criterion.
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Its search heuristic is based on iteratively performing a series
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of Subtree Pruning and Regrafting (SPR) moves,
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which allows to quickly navigate to the best-known ML tree.
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RAxML-NG is a successor of RAxML (Stamatakis 2014) and leverages
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the highly optimized likelihood computation implemented in libpll
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(Flouri et al. 2014)."""
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homepage = "https://github.com/amkozlov/raxml-ng/wiki"
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url = "https://github.com/amkozlov/raxml-ng/archive/1.0.1.tar.gz"
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git = "https://github.com/amkozlov/raxml-ng.git"
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version("1.1.0", submodules=True)
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version("1.0.2", submodules=True)
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version("1.0.1", submodules=True)
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variant("mpi", default=True, description="Use MPI")
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depends_on("bison")
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depends_on("flex")
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depends_on("gmp")
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depends_on("mpi", when="+mpi")
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def cmake_args(self):
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return [self.define_from_variant("USE_MPI", "mpi")]
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