49 lines
2.0 KiB
Python
49 lines
2.0 KiB
Python
##############################################################################
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# Copyright (c) 2013-2018, Lawrence Livermore National Security, LLC.
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# Produced at the Lawrence Livermore National Laboratory.
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#
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# This file is part of Spack.
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# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
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# LLNL-CODE-647188
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#
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# For details, see https://github.com/spack/spack
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# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
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#
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# This program is free software; you can redistribute it and/or modify
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# it under the terms of the GNU Lesser General Public License (as
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# published by the Free Software Foundation) version 2.1, February 1999.
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#
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# This program is distributed in the hope that it will be useful, but
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# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
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# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
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# conditions of the GNU Lesser General Public License for more details.
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#
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# You should have received a copy of the GNU Lesser General Public
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# License along with this program; if not, write to the Free Software
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# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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##############################################################################
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from spack import *
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import os
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class Trf(Package):
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"""Tandem Repeats Finder is a program to locate and display tandem repeats
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in DNA sequences.
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Note: A manual download is required for TRF.
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Spack will search your current directory for the download file.
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Alternatively, add this file to a mirror so that Spack can find it.
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For instructions on how to set up a mirror, see
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http://spack.readthedocs.io/en/latest/mirrors.html"""
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homepage = "https://tandem.bu.edu/trf/trf.html"
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version('4.09', '0c594fe666e0332db1df9d160d7fabc8', expand=False,
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url='file://{0}/trf409.linux64'.format(os.getcwd()))
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def install(self, spec, prefix):
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mkdirp(prefix.bin)
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install('trf409.linux64', prefix.bin.trf)
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chmod = which('chmod')
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chmod('+x', prefix.bin.trf)
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