92e6616a8a
* dealii: workaround for concretization bug * trilinos: add Anasazi which got disabled recently
301 lines
12 KiB
Python
301 lines
12 KiB
Python
##############################################################################
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# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
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# Produced at the Lawrence Livermore National Laboratory.
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#
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# This file is part of Spack.
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# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
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# LLNL-CODE-647188
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#
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# For details, see https://github.com/llnl/spack
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# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
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#
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# This program is free software; you can redistribute it and/or modify
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# it under the terms of the GNU Lesser General Public License (as
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# published by the Free Software Foundation) version 2.1, February 1999.
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#
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# This program is distributed in the hope that it will be useful, but
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# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
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# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
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# conditions of the GNU Lesser General Public License for more details.
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#
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# You should have received a copy of the GNU Lesser General Public
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# License along with this program; if not, write to the Free Software
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# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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##############################################################################
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from spack import *
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import os
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class Dealii(CMakePackage):
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"""C++ software library providing well-documented tools to build finite
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element codes for a broad variety of PDEs."""
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homepage = "https://www.dealii.org"
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url = "https://github.com/dealii/dealii/releases/download/v8.4.1/dealii-8.4.1.tar.gz"
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# Don't add RPATHs to this package for the full build DAG.
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# only add for immediate deps.
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transitive_rpaths = False
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version('8.5.0', 'ef999cc310b007559a6343bf5b1759bc')
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version('8.4.2', '84c6bd3f250d3e0681b645d24cb987a7')
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version('8.4.1', 'efbaf16f9ad59cfccad62302f36c3c1d')
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version('8.4.0', 'ac5dbf676096ff61e092ce98c80c2b00')
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version('8.3.0', 'fc6cdcb16309ef4bea338a4f014de6fa')
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version('8.2.1', '71c728dbec14f371297cd405776ccf08')
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version('8.1.0', 'aa8fadc2ce5eb674f44f997461bf668d')
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version('develop', git='https://github.com/dealii/dealii.git', branch='master')
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variant('mpi', default=True, description='Compile with MPI')
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variant('arpack', default=True,
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description='Compile with Arpack and PArpack (only with MPI)')
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variant('doc', default=False,
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description='Compile with documentation')
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variant('gsl', default=True, description='Compile with GSL')
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variant('hdf5', default=True,
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description='Compile with HDF5 (only with MPI)')
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variant('metis', default=True, description='Compile with Metis')
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variant('netcdf', default=True,
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description='Compile with Netcdf (only with MPI)')
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variant('oce', default=True, description='Compile with OCE')
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variant('p4est', default=True,
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description='Compile with P4est (only with MPI)')
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variant('petsc', default=True,
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description='Compile with Petsc (only with MPI)')
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variant('slepc', default=True,
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description='Compile with Slepc (only with Petsc and MPI)')
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variant('trilinos', default=True,
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description='Compile with Trilinos (only with MPI)')
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variant('python', default=True,
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description='Compile with Python bindings')
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variant('int64', default=False,
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description='Compile with 64 bit indices support')
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variant('optflags', default=False,
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description='Compile using additional optimization flags')
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# required dependencies, light version
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depends_on("blas")
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# Boost 1.58 is blacklisted, see
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# https://github.com/dealii/dealii/issues/1591
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# Require at least 1.59
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# +python won't affect @:8.4.2
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# FIXME: once concretizer can unite unconditional and
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# conditional dependencies, simplify to:
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# depends_on("boost@1.59.0+thread+system+serialization+iostreams")
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# depends_on("boost+mpi", when='+mpi')
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# depends_on("boost+python", when='+python')
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depends_on("boost@1.59.0:+thread+system+serialization+iostreams",
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when='@:8.4.2~mpi')
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depends_on("boost@1.59.0:+thread+system+serialization+iostreams+mpi",
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when='@:8.4.2+mpi')
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# since @8.5.0: (and @develop) python bindings are introduced:
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depends_on("boost@1.59.0:+thread+system+serialization+iostreams",
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when='@8.5.0:~mpi~python')
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depends_on("boost@1.59.0:+thread+system+serialization+iostreams+mpi",
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when='@8.5.0:+mpi~python')
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depends_on("boost@1.59.0:+thread+system+serialization+iostreams+python",
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when='@8.5.0:~mpi+python')
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depends_on(
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"boost@1.59.0:+thread+system+serialization+iostreams+mpi+python",
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when='@8.5.0:+mpi+python')
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depends_on("bzip2")
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depends_on("lapack")
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depends_on("muparser")
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depends_on("suite-sparse")
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depends_on("tbb")
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depends_on("zlib")
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# optional dependencies
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depends_on("mpi", when="+mpi")
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depends_on("arpack-ng+mpi", when='+arpack+mpi')
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depends_on("doxygen+graphviz", when='+doc')
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depends_on("graphviz", when='+doc')
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depends_on("gsl", when='@8.5.0:+gsl')
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depends_on("hdf5+mpi", when='+hdf5+mpi')
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# FIXME: concretizer bug. The two lines mimic what comes from PETSc
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# but we should not need it
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depends_on("metis@5:+int64+real64", when='+metis+int64')
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depends_on("metis@5:~int64+real64", when='+metis~int64')
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depends_on("netcdf+mpi", when="+netcdf+mpi")
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depends_on("netcdf-cxx", when='+netcdf+mpi')
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depends_on("oce", when='+oce')
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depends_on("p4est", when='+p4est+mpi')
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depends_on("petsc+mpi~int64", when='+petsc+mpi~int64')
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depends_on("petsc+mpi+int64", when='+petsc+mpi+int64')
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depends_on("petsc@:3.6.4", when='@:8.4.1+petsc+mpi')
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depends_on('python', when='@8.5.0:+python')
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depends_on("slepc", when='+slepc+petsc+mpi')
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depends_on("slepc@:3.6.3", when='@:8.4.1+slepc+petsc+mpi')
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depends_on("slepc~arpack", when='+slepc+petsc+mpi+int64')
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depends_on("trilinos+amesos+aztec+epetra+ifpack+ml+muelu+sacado+teuchos", when='+trilinos+mpi~int64')
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depends_on("trilinos+amesos+aztec+epetra+ifpack+ml+muelu+sacado+teuchos~hypre", when="+trilinos+mpi+int64")
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# check that the combination of variants makes sense
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conflicts('+gsl', when='@:8.4.2')
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conflicts('+python', when='@:8.4.2')
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for p in ['+arpack', '+hdf5', '+netcdf', '+p4est', '+petsc',
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'+slepc', '+trilinos']:
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conflicts(p, when='~mpi')
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def build_type(self):
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# CMAKE_BUILD_TYPE should be DebugRelease | Debug | Release
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return 'DebugRelease'
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def cmake_args(self):
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spec = self.spec
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options = []
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# release flags
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cxx_flags_release = []
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# debug and release flags
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cxx_flags = []
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lapack_blas = spec['lapack'].libs + spec['blas'].libs
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options.extend([
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'-DDEAL_II_COMPONENT_EXAMPLES=ON',
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'-DDEAL_II_WITH_THREADS:BOOL=ON',
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'-DBOOST_DIR=%s' % spec['boost'].prefix,
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'-DBZIP2_DIR=%s' % spec['bzip2'].prefix,
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# CMake's FindBlas/Lapack may pickup system's blas/lapack instead
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# of Spack's. Be more specific to avoid this.
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# Note that both lapack and blas are provided in -DLAPACK_XYZ.
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'-DLAPACK_FOUND=true',
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'-DLAPACK_INCLUDE_DIRS=%s;%s' % (
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spec['lapack'].prefix.include, spec['blas'].prefix.include),
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'-DLAPACK_LIBRARIES=%s' % lapack_blas.joined(';'),
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'-DMUPARSER_DIR=%s' % spec['muparser'].prefix,
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'-DUMFPACK_DIR=%s' % spec['suite-sparse'].prefix,
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'-DTBB_DIR=%s' % spec['tbb'].prefix,
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'-DZLIB_DIR=%s' % spec['zlib'].prefix
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])
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# Set recommended flags for maximum (matrix-free) performance, see
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# https://groups.google.com/forum/?fromgroups#!topic/dealii/3Yjy8CBIrgU
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if spec.satisfies('%gcc'):
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cxx_flags_release.extend(['-O3'])
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cxx_flags.extend(['-march=native'])
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elif spec.satisfies('%intel'):
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cxx_flags_release.extend(['-O3'])
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cxx_flags.extend(['-march=native'])
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elif spec.satisfies('%clang'):
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cxx_flags_release.extend(['-O3', '-ffp-contract=fast'])
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cxx_flags.extend(['-march=native'])
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# Python bindings
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if spec.satisfies('@8.5.0:'):
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options.extend([
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'-DDEAL_II_COMPONENT_PYTHON_BINDINGS=%s' %
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('ON' if '+python' in spec else 'OFF')
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])
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# Set directory structure:
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if spec.satisfies('@:8.2.1'):
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options.extend(['-DDEAL_II_COMPONENT_COMPAT_FILES=OFF'])
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else:
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options.extend([
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'-DDEAL_II_EXAMPLES_RELDIR=share/deal.II/examples',
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'-DDEAL_II_DOCREADME_RELDIR=share/deal.II/',
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'-DDEAL_II_DOCHTML_RELDIR=share/deal.II/doc'
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])
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# MPI
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if '+mpi' in spec:
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options.extend([
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'-DDEAL_II_WITH_MPI:BOOL=ON',
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'-DCMAKE_C_COMPILER=%s' % spec['mpi'].mpicc,
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'-DCMAKE_CXX_COMPILER=%s' % spec['mpi'].mpicxx,
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'-DCMAKE_Fortran_COMPILER=%s' % spec['mpi'].mpifc,
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])
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else:
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options.extend([
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'-DDEAL_II_WITH_MPI:BOOL=OFF',
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])
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# Optional dependencies for which library names are the same as CMake
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# variables:
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for library in (
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'gsl', 'hdf5', 'p4est', 'petsc', 'slepc', 'trilinos', 'metis'):
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if library in spec:
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options.extend([
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'-D%s_DIR=%s' % (library.upper(), spec[library].prefix),
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'-DDEAL_II_WITH_%s:BOOL=ON' % library.upper()
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])
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else:
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options.extend([
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'-DDEAL_II_WITH_%s:BOOL=OFF' % library.upper()
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])
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# doxygen
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options.extend([
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'-DDEAL_II_COMPONENT_DOCUMENTATION=%s' %
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('ON' if '+doc' in spec else 'OFF'),
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])
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# arpack
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if '+arpack' in spec and '+mpi' in spec:
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options.extend([
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'-DARPACK_DIR=%s' % spec['arpack-ng'].prefix,
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'-DDEAL_II_WITH_ARPACK=ON',
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'-DDEAL_II_ARPACK_WITH_PARPACK=ON'
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])
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else:
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options.extend([
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'-DDEAL_II_WITH_ARPACK=OFF'
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])
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# since Netcdf is spread among two, need to do it by hand:
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if '+netcdf' in spec and '+mpi' in spec:
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# take care of lib64 vs lib installed lib locations:
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if os.path.isdir(spec['netcdf-cxx'].prefix.lib):
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netcdfcxx_lib_dir = spec['netcdf-cxx'].prefix.lib
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else:
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netcdfcxx_lib_dir = spec['netcdf-cxx'].prefix.lib64
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if os.path.isdir(spec['netcdf'].prefix.lib):
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netcdf_lib_dir = spec['netcdf'].prefix.lib
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else:
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netcdf_lib_dir = spec['netcdf'].prefix.lib64
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options.extend([
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'-DNETCDF_FOUND=true',
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'-DNETCDF_LIBRARIES=%s;%s' % (
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join_path(netcdfcxx_lib_dir,
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'libnetcdf_c++.%s' % dso_suffix),
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join_path(netcdf_lib_dir,
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'libnetcdf.%s' % dso_suffix)),
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'-DNETCDF_INCLUDE_DIRS=%s;%s' % (
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spec['netcdf-cxx'].prefix.include,
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spec['netcdf'].prefix.include),
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])
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else:
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options.extend([
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'-DDEAL_II_WITH_NETCDF=OFF'
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])
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# Open Cascade
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if '+oce' in spec:
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options.extend([
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'-DOPENCASCADE_DIR=%s' % spec['oce'].prefix,
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'-DDEAL_II_WITH_OPENCASCADE=ON'
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])
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else:
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options.extend([
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'-DDEAL_II_WITH_OPENCASCADE=OFF'
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])
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# 64 bit indices
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options.extend([
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'-DDEAL_II_WITH_64BIT_INDICES=%s' % ('+int64' in spec)
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])
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# collect CXX flags:
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if len(cxx_flags_release) > 0 and '+optflags' in spec:
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options.extend([
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'-DCMAKE_CXX_FLAGS_RELEASE:STRING=%s' % (
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' '.join(cxx_flags_release)),
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'-DCMAKE_CXX_FLAGS:STRING=%s' % (
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' '.join(cxx_flags))
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])
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return options
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def setup_environment(self, spack_env, run_env):
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run_env.set('DEAL_II_DIR', self.prefix)
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