51 lines
2.5 KiB
Python
51 lines
2.5 KiB
Python
##############################################################################
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# Copyright (c) 2013-2018, Lawrence Livermore National Security, LLC.
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# Produced at the Lawrence Livermore National Laboratory.
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#
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# This file is part of Spack.
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# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
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# LLNL-CODE-647188
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#
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# For details, see https://github.com/spack/spack
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# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
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#
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# This program is free software; you can redistribute it and/or modify
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# it under the terms of the GNU Lesser General Public License (as
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# published by the Free Software Foundation) version 2.1, February 1999.
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#
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# This program is distributed in the hope that it will be useful, but
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# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
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# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
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# conditions of the GNU Lesser General Public License for more details.
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#
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# You should have received a copy of the GNU Lesser General Public
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# License along with this program; if not, write to the Free Software
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# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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##############################################################################
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from spack import *
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class RGenomeinfodb(RPackage):
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"""Contains data and functions that define and allow translation between
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different chromosome sequence naming conventions (e.g., "chr1"
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versus "1"), including a function that attempts to place sequence
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names in their natural, rather than lexicographic, order."""
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homepage = "https://bioconductor.org/packages/GenomeInfoDb/"
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git = "https://git.bioconductor.org/packages/GenomeInfoDb.git"
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version('1.16.0', commit='6543dad89bbc2c275010b329eb114b237fd712fa')
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version('1.14.0', commit='4978308a57d887b764cc4ce83724ca1758f580f6')
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version('1.12.3', commit='2deef3f0571b7f622483257bc22d2509ab5a0369')
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depends_on('r-biocgenerics', type=('build', 'run'))
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depends_on('r-biocgenerics@0.13.8:', when='@1.16.0', type=('build', 'run'))
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depends_on('r-s4vectors', type=('build', 'run'))
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depends_on('r-s4vectors@0.17.25:', when='@1.16.0', type=('build', 'run'))
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depends_on('r-iranges', type=('build', 'run'))
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depends_on('r-iranges@2.13.12:', when='@1.16.0', type=('build', 'run'))
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depends_on('r-rcurl', type=('build', 'run'))
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depends_on('r-genomeinfodbdata', type=('build', 'run'))
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depends_on('r@3.4.0:3.4.9', when='@1.12.3', type=('build', 'run'))
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depends_on('r@3.5.0:3.5.9', when='@1.16.0', type=('build', 'run'))
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