c23bea80bd
* create new package py-atropos * remove whitespace * make tqdm and pysam dependencies optional, exposed as variants
27 lines
1.1 KiB
Python
27 lines
1.1 KiB
Python
# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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class PyAtropos(PythonPackage):
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"""Atropos is tool for specific, sensitive, and speedy trimming of NGS
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reads. It is a fork of the venerable Cutadapt read trimmer."""
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homepage = "https://atropos.readthedocs.io"
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url = "https://pypi.io/packages/source/a/atropos/atropos-1.1.22.tar.gz"
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git = "https://github.com/jdidion/atropos.git"
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version('1.1.22', sha256='05e40cb9337421479c692e1154b962fbf811d7939b72c197a024929b7ae88b78')
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depends_on('python@3.3:', type=('build', 'run'))
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depends_on('py-setuptools', type=('build', 'run'))
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depends_on('py-cython@0.25.2:', type='build')
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depends_on('py-tqdm', type=('build', 'run'), when='+tqdm')
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depends_on('py-pysam', type=('build', 'run'), when='+pysam')
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variant('tqdm', default=False, description='Enable progress bar')
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variant('pysam', default=False, description='Enable bam file parsing')
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