b932c14008
* Bump the package API of the `builtin` repo to `v2.0`
* Move `var/spack/repos/builtin` -> `var/spack/repos/spack_repo/builtin`
* Move test repos `var/spack/repos/{builtin.mock,tutorial,...}` -> `var/spack/test_repos/`
* Update package dir names to v2 format (`-` -> `_` etc)
* Change absolute imports `from spack.pkg.builtin.my_pkg ...` to relative imports `from ..my_pkg.package ...`
Users who have a repo on top of builtin should change imports from
```python
from spack.pkg.builtin.my_pkg import MyPkg
```
to
```python
from spack_repo.builtin.packages.my_pkg.package import MyPkg
```
and can configure their editors with
```
PYTHONPATH=$spack/lib/spack:$spack/var/spack/repos
```
[skip-verify-checksums]
48 lines
1.5 KiB
Python
48 lines
1.5 KiB
Python
# Copyright Spack Project Developers. See COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack.package import *
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from ..boost.package import Boost
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class Mira(AutotoolsPackage):
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"""MIRA is a multi-pass DNA sequence data assembler/mapper for whole genome
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and EST/RNASeq projects."""
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homepage = "https://sourceforge.net/projects/mira-assembler/"
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url = "https://downloads.sourceforge.net/project/mira-assembler/MIRA/stable/mira-4.0.2.tar.bz2"
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license("GPL-2.0-or-later")
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version("4.0.2", sha256="a32cb2b21e0968a5536446287c895fe9e03d11d78957554e355c1080b7b92a80")
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depends_on("cxx", type="build") # generated
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depends_on("boost@1.46:")
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# TODO: replace this with an explicit list of components of Boost,
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# for instance depends_on('boost +filesystem')
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# See https://github.com/spack/spack/pull/22303 for reference
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depends_on(Boost.with_default_variants)
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depends_on("expat@2.0.1:")
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depends_on("gperftools")
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conflicts("%gcc@6:", when="@:4.0.2")
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def patch(self):
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with working_dir(join_path("src", "progs")):
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edit = FileFilter("quirks.C")
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edit.filter(
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"#include <boost/filesystem.hpp>",
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"#include <boost/filesystem.hpp>\n#include <iostream>",
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)
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def configure_args(self):
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args = [
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"--with-boost=%s" % self.spec["boost"].prefix,
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"--with-expat=%s" % self.spec["expat"].prefix,
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]
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return args
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