b932c14008
* Bump the package API of the `builtin` repo to `v2.0`
* Move `var/spack/repos/builtin` -> `var/spack/repos/spack_repo/builtin`
* Move test repos `var/spack/repos/{builtin.mock,tutorial,...}` -> `var/spack/test_repos/`
* Update package dir names to v2 format (`-` -> `_` etc)
* Change absolute imports `from spack.pkg.builtin.my_pkg ...` to relative imports `from ..my_pkg.package ...`
Users who have a repo on top of builtin should change imports from
```python
from spack.pkg.builtin.my_pkg import MyPkg
```
to
```python
from spack_repo.builtin.packages.my_pkg.package import MyPkg
```
and can configure their editors with
```
PYTHONPATH=$spack/lib/spack:$spack/var/spack/repos
```
[skip-verify-checksums]
29 lines
1.0 KiB
Python
29 lines
1.0 KiB
Python
# Copyright Spack Project Developers. See COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack.package import *
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class Pplacer(Package):
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"""Pplacer places query sequences on a fixed reference phylogenetic tree
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to maximize phylogenetic likelihood or posterior probability according
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to a reference alignment. Pplacer is designed to be fast, to give
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useful information about uncertainty, and to offer advanced
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visualization and downstream analysis.
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"""
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homepage = "https://matsen.fhcrc.org/pplacer/"
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url = "https://github.com/matsen/pplacer/releases/download/v1.1.alpha19/pplacer-linux-v1.1.alpha19.zip"
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version(
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"1.1.alpha19", sha256="9131b45c35ddb927f866385f149cf64af5dffe724234cd4548c22303a992347d"
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)
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def install(self, spec, prefix):
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install_tree("scripts", prefix.bin)
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force_remove(join_path(prefix.bin, "setup.py"))
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install("guppy", prefix.bin)
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install("pplacer", prefix.bin)
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install("rppr", prefix.bin)
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