c53541e448
* Bump samtools and hstlib to version 1.8. * rm .bak. * Bump bcftools to 1.8. * bcftools@1.8 depends on libzip.
57 lines
2.4 KiB
Python
57 lines
2.4 KiB
Python
##############################################################################
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# Copyright (c) 2013-2018, Lawrence Livermore National Security, LLC.
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# Produced at the Lawrence Livermore National Laboratory.
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#
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# This file is part of Spack.
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# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
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# LLNL-CODE-647188
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#
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# For details, see https://github.com/spack/spack
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# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
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#
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# This program is free software; you can redistribute it and/or modify
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# it under the terms of the GNU Lesser General Public License (as
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# published by the Free Software Foundation) version 2.1, February 1999.
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#
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# This program is distributed in the hope that it will be useful, but
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# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
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# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
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# conditions of the GNU Lesser General Public License for more details.
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#
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# You should have received a copy of the GNU Lesser General Public
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# License along with this program; if not, write to the Free Software
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# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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##############################################################################
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from spack import *
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class Htslib(AutotoolsPackage):
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"""C library for high-throughput sequencing data formats."""
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homepage = "https://github.com/samtools/htslib"
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version('1.8', '54e9b3a04251fa59b1878f6b546b5c79')
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version('1.7', 'd3cc7e080a9a8c4161d8f62b56d3b98d')
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version('1.6', 'd6fd14e208aca7e08cbe9072233d0af9')
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version('1.4', '2a22ff382654c033c40e4ec3ea880050')
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version('1.3.1', '16d78f90b72f29971b042e8da8be6843')
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version('1.2', '64026d659c3b062cfb6ddc8a38e9779f')
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depends_on('zlib')
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depends_on('bzip2', when="@1.4:")
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depends_on('xz', when="@1.4:")
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depends_on('m4', when="@1.2")
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depends_on('autoconf', when="@1.2")
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depends_on('automake', when="@1.2")
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depends_on('libtool', when="@1.2")
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# v1.2 uses the automagically assembled tarball from .../archive/...
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# everything else uses the tarballs uploaded to the release
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def url_for_version(self, version):
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if version.string == '1.2':
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return 'https://github.com/samtools/htslib/archive/1.2.tar.gz'
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else:
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url = "https://github.com/samtools/htslib/releases/download/{0}/htslib-{0}.tar.bz2"
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return url.format(version.dotted)
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