35 lines
1.2 KiB
Python
35 lines
1.2 KiB
Python
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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class Msmc(MakefilePackage):
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"""This software implements MSMC, a method to infer population size
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and gene flow from multiple genome sequences"""
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homepage = "https://github.com/stschiff/msmc"
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url = "https://github.com/stschiff/msmc/archive/v1.1.0.tar.gz"
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version('1.1.0', sha256='989064400fe392ca3d2ac1a253ce7edf1801b6a7eeb77bbf2ff7bf67910216c4')
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depends_on('gsl', type=('build', 'run'))
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depends_on('dmd', type='build')
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def edit(self, spec, prefix):
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filter_file('dmd',
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join_path(self.spec['dmd'].prefix.linux.bin64, 'dmd'),
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'Makefile', string=True)
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def build(self, spec, prefix):
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gsllibdir = self.spec['gsl'].prefix.lib
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libgsl = join_path(gsllibdir, 'libgsl.a')
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libgslcblas = join_path(gsllibdir, 'libgslcblas.a')
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make('GSL={0} {1}'.format(libgsl, libgslcblas))
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def install(self, spec, prefix):
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mkdirp(prefix.bin)
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install_tree('build', prefix.bin)
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