27 lines
1.1 KiB
Python
27 lines
1.1 KiB
Python
# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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class RFgsea(RPackage):
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"""The package implements an algorithm for fast gene set enrichment
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analysis. Using the fast algorithm allows to make more permutations
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and get more fine grained p-values, which allows to use accurate
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stantard approaches to multiple hypothesis correction."""
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homepage = "https://www.bioconductor.org/packages/fgsea/"
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git = "https://git.bioconductor.org/packages/fgsea.git"
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version('1.2.1', commit='99b04eef664204d0dca4b9f8027cd7eefb006b72')
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depends_on('r@3.4.0:3.4.9', when='@1.2.1')
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depends_on('r-fastmatch', type=('build', 'run'))
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depends_on('r-gridextra', type=('build', 'run'))
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depends_on('r-ggplot2', type=('build', 'run'))
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depends_on('r-biocparallel', type=('build', 'run'))
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depends_on('r-data-table', type=('build', 'run'))
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depends_on('r-rcpp', type=('build', 'run'))
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