23 lines
782 B
Python
23 lines
782 B
Python
# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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class PyBreakseq2(PythonPackage):
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"""nucleotide-resolution analysis of structural variants"""
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homepage = "http://bioinform.github.io/breakseq2/"
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url = "https://github.com/bioinform/breakseq2/archive/2.2.tar.gz"
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version('2.2', '6fd5a103c2781717b0b1d0efcbdc17e7')
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depends_on('py-setuptools', type='build')
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depends_on('py-biopython@1.65', type=('build', 'run'))
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depends_on('py-cython', type='build')
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depends_on('py-pysam@0.7.7', type=('build', 'run'))
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depends_on('bwa', type='run')
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depends_on('samtools', type='run')
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