34 lines
1.5 KiB
Python
34 lines
1.5 KiB
Python
# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack.package import *
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class RPicante(RPackage):
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"""R tools for integrating phylogenies and ecology.
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Functions for phylocom integration, community analyses, null-models, traits
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and evolution. Implements numerous ecophylogenetic approaches including
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measures of community phylogenetic and trait diversity, phylogenetic
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signal, estimation of trait values for unobserved taxa, null models for
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community and phylogeny randomizations, and utility functions for data
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input/output and phylogeny plotting. A full description of package
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functionality and methods are provided by Kembel et al. (2010)
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<doi:10.1093/bioinformatics/btq166>."""
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cran = "picante"
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license("GPL-2.0-only")
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version("1.8.2", sha256="56565ca7f7c37f49c961372a816724967c21a4f5025cd69b8b671122bfdc4aa7")
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version("1.8", sha256="81a6308dbb53c9cdab30c1f9ac727abee76314351823b3a2142c21ed8e1498ad")
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version("1.7", sha256="75e4d73080db67e776562a1d58685438461cbde39af46900c7838da56aef0a62")
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version("1.6-2", sha256="4db3a5a0fe5e4e9197c96245195843294fbb8d0a324edcde70c6ab01276ab7ff")
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version("1.6-1", sha256="2708315b26737857a6729fd67bde06bc939930035c5b09a8bba472a593f24000")
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depends_on("r-ape", type=("build", "run"))
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depends_on("r-vegan", type=("build", "run"))
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depends_on("r-nlme", type=("build", "run"))
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