52 lines
2.1 KiB
Python
52 lines
2.1 KiB
Python
##############################################################################
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# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
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# Produced at the Lawrence Livermore National Laboratory.
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#
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# This file is part of Spack.
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# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
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# LLNL-CODE-647188
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#
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# For details, see https://github.com/spack/spack
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# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
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#
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# This program is free software; you can redistribute it and/or modify
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# it under the terms of the GNU Lesser General Public License (as
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# published by the Free Software Foundation) version 2.1, February 1999.
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#
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# This program is distributed in the hope that it will be useful, but
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# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
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# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
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# conditions of the GNU Lesser General Public License for more details.
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#
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# You should have received a copy of the GNU Lesser General Public
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# License along with this program; if not, write to the Free Software
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# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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##############################################################################
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from spack import *
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import glob
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import os
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class Kraken(Package):
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"""Kraken is a system for assigning taxonomic labels to short DNA
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sequences, usually obtained through metagenomic studies."""
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homepage = "https://ccb.jhu.edu/software/kraken/"
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url = "https://github.com/DerrickWood/kraken/archive/v1.0.tar.gz"
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version('1.0', 'e790d6b09662bbd810aa34517ef66586')
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depends_on('perl', type=('build', 'run'))
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# Does NOT support JELLYFISH 2.0. Ver 1.1.11 is the last version of
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# JELLYFISH 1.
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depends_on('jellyfish@1.1.11', when='@1.0')
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def install(self, spec, prefix):
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installer = Executable('./install_kraken.sh')
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installer(self.stage.source_path)
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mkdirp(prefix.bin)
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files = glob.iglob('*')
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for file in files:
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if os.path.isfile(file):
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install(file, prefix.bin)
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