c032b2d9db
* added htslib 1.7 and checksum * py-breakseq2: new package!!!! * py-breakseq2: fixed whitespace * py-breakseq2: added additional dependencies * py-breakseq2: fixed build/run depends * py-breakseq2: added additonal dependencies
42 lines
1.8 KiB
Python
42 lines
1.8 KiB
Python
##############################################################################
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# Copyright (c) 2013-2018, Lawrence Livermore National Security, LLC.
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# Produced at the Lawrence Livermore National Laboratory.
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#
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# This file is part of Spack.
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# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
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# LLNL-CODE-647188
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#
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# For details, see https://github.com/spack/spack
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# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
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#
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# This program is free software; you can redistribute it and/or modify
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# it under the terms of the GNU Lesser General Public License (as
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# published by the Free Software Foundation) version 2.1, February 1999.
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#
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# This program is distributed in the hope that it will be useful, but
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# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
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# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
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# conditions of the GNU Lesser General Public License for more details.
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#
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# You should have received a copy of the GNU Lesser General Public
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# License along with this program; if not, write to the Free Software
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# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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##############################################################################
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from spack import *
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class PyBreakseq2(PythonPackage):
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"""nucleotide-resolution analysis of structural variants"""
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homepage = "http://bioinform.github.io/breakseq2/"
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url = "https://github.com/bioinform/breakseq2/archive/2.2.tar.gz"
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version('2.2', '6fd5a103c2781717b0b1d0efcbdc17e7')
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depends_on('py-setuptools', type='build')
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depends_on('py-biopython@1.65', type=('build', 'run'))
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depends_on('py-cython', type='build')
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depends_on('py-pysam@0.7.7', type=('build', 'run'))
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depends_on('bwa', type='run')
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depends_on('samtools', type='run')
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