lingnanyuan cc06112959 r-acepack: Create new package. (#5884)		2017-10-24 11:26:37 +02:00
..
abinit
abyss
ack	Ack: add version 2.18 (#5445)	2017-09-22 19:30:12 -07:00
activeharmony
adept-utils
adios	adios: fixed conditional dependencies on libevpath and dataspaces (#5392)	2017-09-19 14:13:26 +02:00
adios2
adlbx
adol-c
albert
alglib
allinea-forge
allinea-reports
allpaths-lg
alquimia
alsa-lib
amg2013	add newlines at end of some package files	2017-10-24 10:05:36 +02:00
ampliconnoise
amr-exp-parabolic
amrex	fixing tag name for development branch (#5496)	2017-09-28 18:12:02 -07:00
andi
angsd
ant
antlr
ape
apex
applewmproto
appres
apr
apr-util
archer
argtable
armadillo	armadillo: use libs to provide arpack and superlu libraries (#5777)	2017-10-16 12:57:01 +02:00
arpack-ng
asciidoc
aspa	add newlines at end of some package files	2017-10-24 10:05:36 +02:00
aspell	Add package for aspell and ass't dictionaries (#3890)	2017-10-09 14:14:19 -07:00
aspell6-de	Add package for aspell and ass't dictionaries (#3890)	2017-10-09 14:14:19 -07:00
aspell6-en	Add package for aspell and ass't dictionaries (#3890)	2017-10-09 14:14:19 -07:00
aspell6-es	Add package for aspell and ass't dictionaries (#3890)	2017-10-09 14:14:19 -07:00
assimp	add assimp package. link against it in dealii (#5463)	2017-09-25 06:58:13 -06:00
astra
astral
astyle	astyle: homepage dead, use mirror (#5483)	2017-09-26 13:03:34 -06:00
atk
atlas	remove wildcards from make spack core and packages	2017-10-24 10:05:36 +02:00
atompaw
atop
augustus	augustus: url fix (#5311)	2017-09-16 10:20:42 +02:00
autoconf	autoconf, automake: Add missing perl dependency (#5187)	2017-09-26 08:10:22 -06:00
autodock-vina	Autodock vina: spec (#5333)	2017-09-26 14:44:21 -06:00
autogen
automaded
automake	autoconf, automake: Add missing perl dependency (#5187)	2017-09-26 08:10:22 -06:00
bamtools
bamutil
bash
bash-completion
bats
bazel
bbcp
bbmap	bbmap: new package (#5396)	2017-09-20 14:41:25 -07:00
bcftools	samtools: add version 1.6 + some fixes (#5715)	2017-10-12 10:08:31 -06:00
bcl2fastq2	bcl2fastq needs with working_dir: after changes in #5776 (#5803)	2017-10-19 08:59:25 +02:00
bdftopcf
bdw-gc
bear
beast2
bedtools2
beforelight
benchmark
berkeley-db
bertini
bib2xhtml
bigreqsproto
binutils
bioawk	Bioawk: added new package (#5375)	2017-09-16 09:14:57 +02:00
bison	various fixes for macOS high sierra (#5647)	2017-10-12 11:41:57 -07:00
bitmap
blast-plus
blat
blaze
bliss
blitz
bml	Added support for BML+mpi variant (#5563)	2017-10-02 12:51:06 -06:00
boost	Add a new +clanglibcpp option for Boost (#5708)	2017-10-17 01:40:09 -07:00
boostmplcartesianproduct
bowtie
bowtie2
boxlib
bpp-core
bpp-phyl
bpp-seq
bpp-suite
braker
branson	Added spackage for branson (#5520)	2017-09-27 21:50:07 -06:00
brigand
bsseeker2
bucky
busco
butter
bwa
bzip2
c-blosc
caffe
cairo
caliper
callpath
cantera
canu
cap3
cares
cask
catch
cbench
cblas
cbtf
cbtf-argonavis
cbtf-argonavis-gui
cbtf-krell	Add ability to build llvm-openmp-ompt alone, with gnu compilers and use the resulting ompt interface in cbtf-krell and openspeedshop to gather openmp specific performance information. (#5288)	2017-09-26 14:15:37 -06:00
cbtf-lanl
ccache
cctools
cdbfasta
cdd
cddlib
cdhit
cdo
cereal	fix install method of cereal (#5094)	2017-09-21 07:10:51 -06:00
cfitsio
cgal
cgm
cgns	Update recipe for cgns to avoid build warnings/errors: (#5382)	2017-09-20 18:21:14 -06:00
charm	Fix bare 'except:' to placate errors in new flake8 version.	2017-10-24 10:05:36 +02:00
check
chlorop
chombo
cityhash
clamr
cleaveland4
cleverleaf
clfft
clhep
cloc	Provide a new Perl package 'cloc'. (#5525)	2017-09-28 11:30:08 -06:00
cloog
cloverleaf
cloverleaf3d
clustalo
clustalw
cmake	CMake: 3.9.4 (#5614)	2017-10-05 08:57:20 -06:00
cmocka
cmor
cnmem
cnpy
cns-nospec
cntk	Cntk: fixed dependency on protobuf fixes #5266 (#5267)	2017-09-16 10:24:40 +02:00
cntk1bitsgd
codar-cheetah
coevp	Added CoEVP Spackage (#5485)	2017-09-27 21:41:34 -06:00
cohmm	add newlines at end of some package files	2017-10-24 10:05:36 +02:00
coinhsl
comd	CoMD Proxy App with Serial, MPI, OpenMP Support (#4864)	2017-10-17 19:59:57 -06:00
compiz
compositeproto
conduit	update for conduit 0.3.0 release (#5421)	2017-09-25 12:25:40 -06:00
constype
converge
coreutils
corset
cosmomc
cosp2	add newlines at end of some package files	2017-10-24 10:05:36 +02:00
cp2k
cppad
cppcheck
cpprestsdk
cppunit
cppzmq
cram
cryptopp
cscope
csdp
cub
cube
cuda	CUDA 9.0.176 (#5562)	2017-10-02 10:47:32 -06:00
cuda-memtest
cudnn
cufflinks
cups
curl	adding http2 support (#5628)	2017-10-07 09:58:56 -06:00
cvs
czmq
dakota
daligner
damageproto
damselfly
darshan-runtime
darshan-util
dash
datamash
dataspaces
dbus
dealii	dealii: blacklist boost 1.64 and 1.65 (#5805)	2017-10-18 15:58:05 -06:00
dejagnu
dia
dialign-tx
direnv
discovar
dlpack	Add a package: dmlc/mxnet. (#3579)	2017-10-10 13:56:26 -07:00
dmlc-core	Add a package: dmlc/mxnet. (#3579)	2017-10-10 13:56:26 -07:00
dmxproto
docbook-xml
docbook-xsl
dos2unix
double-conversion
doxygen
dri2proto
dri3proto
dtcmp
dyninst
ea-utils
easybuild
ebms
eccodes
ecp-proxy-apps	Add a bundle package for the ECP proxy applications suite (#5689)	2017-10-11 13:39:30 -06:00
editres
eigen
elemental	blas_lapack: add multithreading variant consistent in all implementations. (#5340)	2017-09-23 13:27:42 -07:00
elfutils
elk
elpa
emacs	emacs: add version 25.3 (security update) (#5447)	2017-09-22 16:34:59 -07:00
emboss
encodings
environment-modules
es
esmf	esmf: Fix build (#5607)	2017-10-05 08:58:40 -06:00
espresso	qmcpack: new package (#4907)	2017-10-06 13:51:18 -07:00
etsf-io
everytrace
everytrace-example
evieext
exabayes
exampm	ExaMPM (#5509)	2017-09-27 21:46:32 -06:00
exasp2	ExaSP2 Spackage (#5570)	2017-10-03 16:04:49 -06:00
exmcutils
exodusii
exonerate
expat
expect
extrae
exuberant-ctags
f90cache
falcon
farmhash
fastjar
fastmath	Rm arpack parpack (#5391)	2017-09-20 18:19:04 -06:00
fastphase
fastq-screen	fastq-screen: new package (#5431)	2017-09-28 12:48:31 -06:00
fastqc
fastqvalidator	switching downloads to git (#5659)	2017-10-09 17:07:13 -06:00
fastx-toolkit
fenics
ferret
ffmpeg
fftw
fimpute
findutils
fio
fish
fixesproto
flac
flang	flang: clean up (#5766)	2017-10-17 01:38:41 -07:00
flann	flann: fix build for 1.8.1 (#5508)	2017-09-27 14:39:33 -07:00
flash
flecsale
flecsi
flex
flint
fltk
flux
fmt
foam-extend	remove wildcards from make spack core and packages	2017-10-24 10:05:36 +02:00
folly
font-adobe-75dpi
font-adobe-100dpi
font-adobe-utopia-75dpi
font-adobe-utopia-100dpi
font-adobe-utopia-type1
font-alias
font-arabic-misc
font-bh-75dpi
font-bh-100dpi
font-bh-lucidatypewriter-75dpi
font-bh-lucidatypewriter-100dpi
font-bh-ttf
font-bh-type1
font-bitstream-75dpi
font-bitstream-100dpi
font-bitstream-speedo
font-bitstream-type1
font-cronyx-cyrillic
font-cursor-misc
font-daewoo-misc
font-dec-misc
font-ibm-type1
font-isas-misc
font-jis-misc
font-micro-misc
font-misc-cyrillic
font-misc-ethiopic
font-misc-meltho
font-misc-misc
font-mutt-misc
font-schumacher-misc
font-screen-cyrillic
font-sony-misc
font-sun-misc
font-util
font-winitzki-cyrillic
font-xfree86-type1
fontcacheproto
fontconfig
fontsproto
fonttosfnt
freebayes
freetype
fseq
fsl	fsl: new package (#5605)	2017-10-05 11:57:57 -07:00
fslsfonts
fstobdf
funhpc
gapcloser
gapfiller
gasnet
gaussian
gawk
gblocks
gcc	various fixes for macOS high sierra (#5647)	2017-10-12 11:41:57 -07:00
gccmakedep
gccxml
gconf
gdal
gdb
gdbm
gdk-pixbuf
geant4
gearshifft
gemmlowp
genemark-et
genometools
geos
gettext	gettext: fix prefix (#5749)	2017-10-13 10:52:55 +02:00
gflags
ghostscript
ghostscript-fonts
giflib
git	git + luafilesystem: minor fixes (#5635)	2017-10-06 13:56:14 -06:00
git-lfs	git-lfs: add 2.2.1 and 2.3.0 (#5429)	2017-09-22 16:36:57 -07:00
gl2ps
glew
glib	Missing perl dependencies (#5204)	2017-09-26 07:27:28 -06:00
glm
global
globalarrays
globus-toolkit
glog
glpk
glproto
gmake
gmap-gsnap
gmime
gmp
gmsh
gnat
gnu-prolog
gnupg
gnuplot
gnutls
go	go: Update to 1.9.1 (#5868)	2017-10-24 11:02:33 +02:00
go-bootstrap
gobject-introspection
googletest	add variant gmock to googletest (#5278)	2017-09-18 19:28:33 -07:00
gource
gperf
gperftools
grackle
gradle
grandr
graphlib
graphmap
graphviz
grib-api
groff
gromacs	gromacs: added 2016.4 (#5376)	2017-09-16 09:12:02 +02:00
gsl	gsl: add 2.4 (#5768)	2017-10-14 16:39:43 -06:00
gtkorvo-atl
gtkorvo-cercs-env
gtkorvo-dill
gtkorvo-enet
gtkplus
gts
guile
h5hut
h5part
h5utils
h5z-zfp
hacckernels	Added hacckernels package (#5533)	2017-09-28 12:46:26 -06:00
hadoop
hapcut2
haploview
harfbuzz
harminv
hdf
hdf5	Update for 'hdf5'. (#5790)	2017-10-24 11:09:08 +02:00
hdf5-blosc	Fix bare 'except:' to placate errors in new flake8 version.	2017-10-24 10:05:36 +02:00
help2man
hepmc
heppdt
highfive
highwayhash
hisat2	hisat2: new package (#5488)	2017-10-02 10:27:06 -07:00
hmmer
hoomd-blue
hpccg
hpctoolkit	Update hpctoolkit and externals to latest release	2017-09-15 12:58:33 -07:00
hpctoolkit-externals	Update hpctoolkit and externals to latest release	2017-09-15 12:58:33 -07:00
hpgmg	new package: hpgmg (#4888)	2017-10-20 17:34:55 -07:00
hpl
hpx
hpx5
hsakmt
hstr
htop
htslib	samtools: add version 1.6 + some fixes (#5715)	2017-10-12 10:08:31 -06:00
httpie	Add info for httpie@0.9.9 (#5451)	2017-09-23 00:40:22 +00:00
hub
hunspell
hwloc
hybpiper
hydra
hypre	hypre: add 2.12.1 (#5653)	2017-10-08 07:27:25 -06:00
ibmisc
iceauth
icedtea
icet
ico
icu4c
id3lib
idba
igraph
ilmbase
image-magick
imake
impute2
infernal
inputproto
intel	added Intel 2018 tools (#5404)	2017-09-20 18:15:20 -06:00
intel-daal	add Intel 2018 libraries (#5354)	2017-09-16 10:10:08 +02:00
intel-gpu-tools
intel-ipp	add Intel 2018 libraries (#5354)	2017-09-16 10:10:08 +02:00
intel-mkl	qmcpack: new package (#4907)	2017-10-06 13:51:18 -07:00
intel-mpi	add Intel 2018 libraries (#5354)	2017-09-16 10:10:08 +02:00
intel-parallel-studio	blas_lapack: add multithreading variant consistent in all implementations. (#5340)	2017-09-23 13:27:42 -07:00
intel-tbb	intel-tbb: add 2018.1 (#5769)	2017-10-14 16:40:23 -06:00
intltool
ior
iozone
ipopt
isaac
isaac-server
isl
itstool
itsx
jags
jansson	jansson: enable shared library (#5857)	2017-10-23 13:32:51 +02:00
jasper
jdk
jemalloc
jmol
jq
json-c
jsoncpp
judy
julia
kahip
kaks-calculator	kaks-calculator: new package (#5725)	2017-10-12 12:47:11 -06:00
kaldi
kallisto
kbproto
kdiff3
kealib
kentutils
kmergenie
kokkos
krims	Add krims and lazyten (#5771)	2017-10-15 11:45:11 -06:00
kripke
lammps	lammps: add user-omp package (#5486)	2017-09-27 12:46:58 -07:00
last
latte	latte: add v1.0.1 (#5403)	2017-09-20 19:02:45 -07:00
launchmon
lazyten	Add krims and lazyten (#5771)	2017-10-15 11:45:11 -06:00
lbann	Lbann flags (#5747)	2017-10-12 20:23:38 -06:00
lbxproxy
lcals
lcms
ldc
ldc-bootstrap
legion
leveldb
lftp	Add info for lftp@4.8.1 (#5452)	2017-09-23 00:39:49 +00:00
libaec
libaio
libapplewm
libarchive
libassuan
libatomic-ops
libbeagle
libbsd
libbson	libbson, libmongoc: Update to 1.8.0 (#5478)	2017-09-27 10:19:10 -06:00
libcanberra
libcap
libcerf
libcircle
libconfig
libctl
libdivsufsort
libdmx
libdrm
libdwarf
libedit
libelf
libemos
libepoxy
libevent
libevpath
libfabric
libffi
libffs
libfontenc
libfs
libgcrypt
libgd
libgit2
libgpg-error
libgpuarray
libgtextutils
libharu
libhio
libice
libiconv
libint
libjpeg
libjpeg-turbo
libksba
liblbxutil
libmatheval
libmesh
libmng
libmongoc	libbson, libmongoc: Update to 1.8.0 (#5478)	2017-09-27 10:19:10 -06:00
libmonitor
libnbc
libogg
liboldx
libpcap	Initial version of libpcap (#5710)	2017-10-12 07:00:21 -06:00
libpciaccess
libpfm4
libpipeline
libpng	libpng: zlib flags more elegant (#5656)	2017-10-09 21:46:10 +02:00
libpsl	Add test deptype (#5132)	2017-09-29 22:08:15 -07:00
libpthread-stubs
libquo	liquo: added 1.3 and develop (#5781)	2017-10-17 01:36:54 -07:00
libsigsegv
libsm
libsodium	libsodium: update URLs (#5355)	2017-09-14 08:16:54 -05:00
libspatialindex
libsplash
libssh2
libsvm
libszip
libtermkey
libtiff
libtool
libunistring
libunwind
libuuid
libuv
libvorbis
libvterm
libwebsockets
libwindowswm
libx11	Add link dependency on xproto to xau (recent dependency mechanics changes?) (#5624)	2017-10-05 16:53:12 -06:00
libxau	Add link dependency on xproto to xau (recent dependency mechanics changes?) (#5624)	2017-10-05 16:53:12 -06:00
libxaw
libxaw3d
libxc
libxcb
libxcomposite
libxcursor
libxdamage
libxdmcp
libxevie
libxext
libxfixes
libxfont
libxfont2
libxfontcache
libxft
libxi
libxinerama
libxkbfile
libxkbui
libxml2	libxml2: use spack's xz (#5816)	2017-10-19 08:32:37 +02:00
libxmu
libxp
libxpm
libxpresent
libxprintapputil
libxprintutil
libxrandr
libxrender	Add link dependency on xproto to xau (recent dependency mechanics changes?) (#5624)	2017-10-05 16:53:12 -06:00
libxres
libxscrnsaver
libxshmfence
libxslt
libxsmm
libxstream
libxt
libxtrap
libxtst
libxv
libxvmc
libxxf86dga
libxxf86misc
libxxf86vm
libyogrt
libzip
likwid	likwid: update versions (#5757)	2017-10-13 16:08:49 -06:00
linkphase3	linkphase3: new package (#5493)	2017-10-02 12:36:39 -06:00
linux-headers
listres
llvm	Update llvm to version 5.0.0 (#5773)	2017-10-15 13:04:40 -06:00
llvm-lld
llvm-openmp-ompt	Add ability to build llvm-openmp-ompt alone, with gnu compilers and use the resulting ompt interface in cbtf-krell and openspeedshop to gather openmp specific performance information. (#5288)	2017-09-26 14:15:37 -06:00
lmdb
lmod	Add info for lmod@7.7 and lmod@7.6.14 (#5450)	2017-09-25 07:31:43 -06:00
lndir
log4cxx
lrslib
lrzip
lua
lua-bitlib
lua-jit
lua-lpeg
lua-luafilesystem	git + luafilesystem: minor fixes (#5635)	2017-10-06 13:56:14 -06:00
lua-luaposix
lua-mpack
luit
lulesh	add newlines at end of some package files	2017-10-24 10:05:36 +02:00
lwgrp
lwm2
lz4
lzma
lzo
m4	Revert "Use cflags instead of the args variable (#5756)" (#5765)	2017-10-14 13:55:02 +02:00
mad-numdiff
mafft
magics
magma
makedepend
mallocmc
man-db
mariadb	orthomcl: new package (#5345)	2017-09-20 15:12:52 -07:00
masa	Masa requires python if +python. (#5547)	2017-09-29 16:14:12 -06:00
matio
matlab
maven	maven: new version (#5631)	2017-10-06 13:53:56 -06:00
maverick
mawk
mbedtls
mcl
mdtest
meep
memaxes
meme
mercurial
mesa	mesa: merge multiple branches into one (#5170)	2017-09-18 11:10:54 -07:00
mesa-glu
meshkit
meson
mesquite
metaphysicl	Add metaphysicl package (#5539)	2017-09-28 18:02:07 -07:00
metis
mfem	Updated external package versions. (#5833)	2017-10-24 11:10:59 +02:00
microbiomeutil
miniaero
miniamr	Add a bundle package for the ECP proxy applications suite (#5689)	2017-10-11 13:39:30 -06:00
miniconda2
miniconda3
minife
minighost
minigmg
minimap2	minimap2: new package (#5722)	2017-10-12 10:07:42 -06:00
minimd
minismac2d
minixyce
mirdeep	mirdeep: new package (#5302)	2017-09-20 15:48:20 -07:00
mitofates
mitos
mkfontdir
mkfontscale
mlhka
moab
molcas
mono	Add info for mono@5.4.0.167 (#5405)	2017-09-20 18:44:53 -06:00
mosh	New version for mosh1.3.2 (#5448)	2017-09-24 15:12:35 -06:00
mothur
mozjs
mpc
mpe2
mpest
mpfr	Tell configure about gmp (#5585)	2017-10-03 14:40:14 -06:00
mpibash
mpiblast
mpich	Additional MPICH configs (#5259)	2017-09-27 10:50:05 -07:00
mpifileutils
mpileaks
mpip
mpir
mpix-launch-swift
mrbayes
mrnet
mrtrix3	mrtrix3: new package (#5568)	2017-10-02 15:56:15 -06:00
msgpack-c
mshadow	Add a package: dmlc/mxnet. (#3579)	2017-10-10 13:56:26 -07:00
multitail	Add package for multitail@6.4.2 (#5567)	2017-10-03 16:05:19 -06:00
multiverso
mummer
mumps
munge
muparser
muscle
muse
muster
mvapich2
mxml
mxnet	Add a package: dmlc/mxnet. (#3579)	2017-10-10 13:56:26 -07:00
nag
nalu	Adding openfast variant to nalu. (#5675)	2017-10-09 20:10:47 -06:00
namd
nano
nanoflann
nasm
nauty	Patches are hashed with specs, and can be associated with dependencies.	2017-09-30 02:06:59 -07:00
nccl
nccmp
ncdu
ncftp
ncl	ncl: Fix temp directory and depend on esmf (#5636)	2017-10-06 13:53:05 -06:00
nco
ncurses
ncview
ndiff
nekbone
neovim
netcdf	Update for 'hdf5'. (#5790)	2017-10-24 11:09:08 +02:00
netcdf-cxx
netcdf-cxx4
netcdf-fortran
netgauge
netgen
netlib-lapack
netlib-scalapack
nettle
nextflow
nfft
nghttp2	Nghttp2 new package (#5627)	2017-10-06 13:59:56 -06:00
nginx
ngmlr
ninja	ninja: add v1.8.2 (#5625)	2017-10-10 12:50:56 -07:00
ninja-fortran
nmap
nnvm	Add a package: dmlc/mxnet. (#3579)	2017-10-10 13:56:26 -07:00
node-js	Fix node-js : requires openssl min 1.0.2 (#5650)	2017-10-08 17:04:09 -06:00
notmuch
npb
npm
npth
nspr
numactl	New Pcakage: numactl (#5371)	2017-09-16 13:00:32 -07:00
numdiff
nut
nwchem	Patches are hashed with specs, and can be associated with dependencies.	2017-09-30 02:06:59 -07:00
ocaml
oce	oce: add 0.18.2 (#5767)	2017-10-14 16:39:21 -06:00
oclock
octave
octave-splines
octopus
of-adios-write	remove wildcards from make spack core and packages	2017-10-24 10:05:36 +02:00
ompss
ompt-openmp
oniguruma
ont-albacore
opari2
openbabel
openblas	remove wildcards from make spack core and packages	2017-10-24 10:05:36 +02:00
opencoarrays
opencv	Opencv: fix dependencies and variants (#5232)	2017-09-20 21:37:52 -07:00
openexr
openfast	Add OpenFAST package (wind turbine simulation tool). (#5662)	2017-10-12 11:42:51 -07:00
openfoam-com	fix bugs found with stricter flake8 rules	2017-10-24 10:05:36 +02:00
openfoam-org	remove wildcards from make spack core and packages	2017-10-24 10:05:36 +02:00
openfst
openjpeg
openmc
openmpi	OpenMPI: add 2.1.2 bug fix release (#5418)	2017-09-21 13:26:23 -07:00
openscenegraph
openspeedshop
openssh
openssl	OpenSSL: Fix Zlib (#5584)	2017-10-04 10:25:11 -06:00
opium
opus
orfm
orthomcl	orthomcl: new package (#5345)	2017-09-20 15:12:52 -07:00
osu-micro-benchmarks
otf
otf2
p4est
p7zip	added p7zip package (#5394)	2017-09-19 22:51:32 +02:00
pacbio-daligner
pacbio-damasker
pacbio-dazz-db
pacbio-dextractor
pagit
pagmo
paml
panda
pango
papi
paradiseo
parallel
parallel-netcdf
paraver
paraview	Forcing Paraview to avoid using git describe to determine its own version number (#5783)	2017-10-16 15:32:23 -06:00
parmetis
parmgridgen
parsimonator
parsplice	parsplice: add version 1.1 (#5461)	2017-09-23 20:28:40 -07:00
partitionfinder
patch
patchelf
pathfinder
pax-utils
pbmpi
pcma
pcre	Update git to @2.14.1, requires pcre+jit variant (#5430)	2017-09-22 16:43:45 -07:00
pcre2
pdsh
pdt
pegtl
pennant
perl	perl: add old version (#5844)	2017-10-20 16:18:24 -07:00
perl-capture-tiny	fastq-screen: new package (#5431)	2017-09-28 12:48:31 -06:00
perl-dbfile
perl-dbi
perl-devel-cycle	mirdeep: new package (#5302)	2017-09-20 15:48:20 -07:00
perl-extutils-makemaker
perl-extutils-pkgconfig	fastq-screen: new package (#5431)	2017-09-28 12:48:31 -06:00
perl-font-ttf	mirdeep: new package (#5302)	2017-09-20 15:48:20 -07:00
perl-gd	fastq-screen: new package (#5431)	2017-09-28 12:48:31 -06:00
perl-gd-graph	fastq-screen: new package (#5431)	2017-09-28 12:48:31 -06:00
perl-gd-text	fastq-screen: new package (#5431)	2017-09-28 12:48:31 -06:00
perl-intervaltree
perl-math-cdf
perl-module-build
perl-padwalker	mirdeep: new package (#5302)	2017-09-20 15:48:20 -07:00
perl-pdf-api2	mirdeep: new package (#5302)	2017-09-20 15:48:20 -07:00
perl-star-fusion
perl-sub-uplevel	mirdeep: new package (#5302)	2017-09-20 15:48:20 -07:00
perl-term-readkey
perl-test-exception	mirdeep: new package (#5302)	2017-09-20 15:48:20 -07:00
perl-test-memory-cycle	mirdeep: new package (#5302)	2017-09-20 15:48:20 -07:00
perl-uri-escape
perl-xml-parser
petsc	petsc: a temporary workaround for concretizer bug in all packages which depend on SLEPc (#5755)	2017-10-16 00:53:55 -07:00
pexsi
pfft
pflotran
pgdspider
pgi
phasta
phylip
picard
pidx
pigz
piranha
pixman
pkg-config
pkgconf
planck-likelihood
plasma	Fix bare 'except:' to placate errors in new flake8 version.	2017-10-24 10:05:36 +02:00
plink
plumed	plumed: reworked patching applications, added new version (#5680)	2017-10-10 12:35:53 -07:00
pmgr-collective
pmix	PMIx: add PMIx package to Spack (#5426)	2017-09-22 11:27:28 -06:00
pnfft
pngwriter
poamsa
pocl	remove wildcards from make spack core and packages	2017-10-24 10:05:36 +02:00
polymake
porta
portage	portage: fixes + added v1.1.* (#5706)	2017-10-16 09:59:41 -07:00
postgresql
ppl
prank
presentproto
preseq
price
primer3
printproto
probconsrna
proj
protobuf	Fix Protobuf URLs (#5373)	2017-09-25 10:47:55 -07:00
proxymngr
pruners-ninja
ps-lite	Add a package: dmlc/mxnet. (#3579)	2017-10-10 13:56:26 -07:00
psi4
pstreams
pugixml
pumi
pvm
py-3to2
py-4suite-xml
py-abipy
py-alabaster
py-apache-libcloud
py-apipkg
py-appdirs
py-appnope
py-apscheduler
py-argcomplete
py-argparse
py-ase
py-asn1crypto
py-astroid
py-astropy
py-attrs
py-autopep8
py-babel
py-backports-abc
py-backports-shutil-get-terminal-size
py-backports-ssl-match-hostname
py-basemap
py-beautifulsoup4
py-binwalk
py-biom-format
py-biopython
py-bleach
py-blessings
py-bokeh
py-boltons
py-bottleneck
py-brian
py-brian2
py-bsddb3	Feature/methycode (#5374)	2017-09-16 12:58:04 -07:00
py-cclib
py-cdat-lite
py-cdo
py-certifi
py-cffi
py-chardet
py-click
py-colorama
py-colormath
py-configparser
py-counter
py-coverage
py-cpuinfo
py-cryptography
py-csvkit	Version fixes for py-csvkit (#5393)	2017-09-22 10:06:15 -07:00
py-current
py-cutadapt
py-cycler
py-cython
py-dask
py-dateutil	Version fixes for py-csvkit (#5393)	2017-09-22 10:06:15 -07:00
py-dbf	Version fixes for py-csvkit (#5393)	2017-09-22 10:06:15 -07:00
py-decorator
py-deeptools
py-dev
py-dill
py-docutils
py-doxypy
py-doxypypy
py-dryscrape
py-dxchange
py-dxfile
py-easybuild-easyblocks
py-easybuild-easyconfigs
py-easybuild-framework
py-edffile
py-elasticsearch
py-elephant
py-emcee
py-entrypoints
py-enum34
py-epydoc
py-espresso	py-espresso: initial commit (#5724)	2017-10-13 12:29:30 -07:00
py-espressopp	espressopp -> py-espressopp (#5732)	2017-10-13 12:28:36 -07:00
py-et-xmlfile
py-execnet
py-fastaindex
py-fasteners
py-faststructure
py-fiscalyear
py-flake8	patch py-mccabe and py-flake8 to not require pytest-runner for install (#5427)	2017-09-25 12:46:47 -07:00
py-flask
py-flexx
py-funcsigs
py-functools32
py-future
py-futures
py-genders
py-genshi
py-git2
py-git-review
py-gnuplot
py-griddataformats
py-guidata
py-guiqwt
py-h5py
py-html2text
py-html5lib
py-httpbin
py-hypothesis
py-idna
py-igraph
py-imagesize
py-iminuit
py-importlib
py-ipaddress
py-ipdb
py-ipykernel
py-ipython
py-ipython-genutils
py-ipywidgets
py-itsdangerous
py-jdcal
py-jedi
py-jinja2
py-joblib
py-jpype
py-jsonschema
py-junit-xml
py-jupyter-client
py-jupyter-console
py-jupyter-core
py-jupyter-notebook
py-keras
py-latexcodec
py-lazy
py-lazyarray
py-libconf
py-line-profiler
py-lit
py-lmfit
py-lockfile
py-logilab-common
py-lxml
py-lzstring
py-macholib
py-machotools
py-macs2
py-mako
py-mappy	minimap2: new package (#5722)	2017-10-12 10:07:42 -06:00
py-markdown
py-markupsafe
py-matplotlib
py-mccabe	patch py-mccabe and py-flake8 to not require pytest-runner for install (#5427)	2017-09-25 12:46:47 -07:00
py-mdanalysis
py-meep
py-memory-profiler	Add package py-memory-profiler (#5413)	2017-09-21 20:00:09 -06:00
py-methylcode	Feature/methycode (#5374)	2017-09-16 12:58:04 -07:00
py-misopy
py-mistune
py-mock
py-mongo
py-monotonic
py-monty
py-mpi4py	py-mpi4py: Add develop version and dependencies (#5798)	2017-10-18 15:56:48 -06:00
py-mpmath
py-multiprocess
py-multiqc
py-mx
py-mxnet	Add a package: dmlc/mxnet. (#3579)	2017-10-10 13:56:26 -07:00
py-myhdl
py-mysqldb1
py-nbconvert
py-nbformat
py-neo
py-nestle
py-netcdf4
py-netifaces
py-networkx
py-nose
py-nosexcover
py-numexpr
py-numpy
py-numpydoc
py-olefile
py-ont-fast5-api
py-openpyxl	Version fixes for py-csvkit (#5393)	2017-09-22 10:06:15 -07:00
py-ordereddict
py-oset
py-packaging
py-palettable
py-pandas
py-paramiko
py-pathlib2
py-pathos
py-pathspec
py-patsy
py-pbr
py-periodictable
py-petsc4py
py-pexpect
py-phonopy
py-pickleshare
py-pil
py-pillow
py-pip
py-pipits
py-pkgconfig
py-ply
py-pmw
py-pox
py-ppft
py-prettytable
py-proj
py-prompt-toolkit
py-protobuf
py-psutil
py-ptyprocess
py-pudb
py-py
py-py2bit
py-py2cairo
py-py2neo
py-py4j
py-pyasn1
py-pybigwig
py-pybind11	add new version to package py-pybind11	2017-09-15 10:13:47 -07:00
py-pybtex
py-pybtex-docutils
py-pychecker
py-pycodestyle
py-pycparser
py-pycrypto
py-pycurl
py-pydatalog
py-pydispatcher
py-pydot
py-pyelftools
py-pyfasta	Feature/methycode (#5374)	2017-09-16 12:58:04 -07:00
py-pyfftw
py-pyflakes
py-pygments
py-pygobject
py-pygtk
py-pylint
py-pymatgen
py-pyminifier
py-pympler
py-pynn
py-pypar
py-pyparsing
py-pypeflow
py-pyprof2html
py-pyqt
py-pyrad
py-pysam
py-pyscaf
py-pyserial
py-pyside
py-pysocks
py-pytables
py-pytest
py-pytest-cov
py-pytest-flake8
py-pytest-httpbin
py-pytest-mock
py-pytest-runner
py-pytest-xdist
py-python-daemon
py-python-gitlab
py-pythonqwt
py-pytz
py-pywavelets
py-pyyaml
py-qtawesome
py-qtconsole
py-qtpy
py-quantities	pr-quantities: add version & py-numpy conflict (#5307)	2017-09-19 13:10:13 -07:00
py-radical-utils
py-ranger
py-readme-renderer
py-regex
py-requests
py-restview
py-rope
py-rpy2
py-rsa
py-rtree
py-saga-python
py-scientificpython
py-scikit-image
py-scikit-learn
py-scipy
py-seaborn
py-setuptools
py-sh
py-shiboken
py-simplegeneric
py-simplejson
py-singledispatch
py-sip
py-six
py-slepc4py
py-sncosmo
py-snowballstemmer
py-spectra
py-spefile
py-spglib
py-sphinx
py-sphinx-bootstrap-theme
py-sphinx-rtd-theme
py-sphinxcontrib-bibtex
py-sphinxcontrib-programoutput
py-sphinxcontrib-websupport
py-spyder
py-spykeutils
py-sqlalchemy
py-statsmodels
py-storm
py-subprocess32
py-symengine
py-symfit
py-sympy
py-tabulate
py-tappy
py-terminado
py-theano
py-tifffile
py-tomopy
py-tornado
py-tqdm
py-traitlets
py-tuiview
py-twisted
py-typing
py-tzlocal
py-unittest2
py-unittest2py3k
py-urllib3
py-urwid
py-vcversioner
py-virtualenv
py-vsc-base
py-vsc-install
py-wcsaxes
py-wcwidth
py-webkit-server
py-werkzeug
py-wheel
py-widgetsnbextension
py-wrapt
py-xarray
py-xlrd
py-xmlrunner
py-xopen
py-xpyb
py-xvfbwrapper
py-yapf
py-yt
py-zmq
python	Fix bare 'except:' to placate errors in new flake8 version.	2017-10-24 10:05:36 +02:00
qbank
qbox
qhull
qmcpack	qmcpack: new package (#4907)	2017-10-06 13:51:18 -07:00
qmd-progress	qmd-progress: add shared variant (#5381)	2017-09-18 15:36:42 -07:00
qrupdate
qt
qt-creator	added qt creator version 4.4.0 (#5518)	2017-09-27 21:49:33 -06:00
qtgraph
qthreads
quinoa
qwt
r	remove wildcards from make spack core and packages	2017-10-24 10:05:36 +02:00
r-a4	bioconductor update (#5786)	2017-10-24 11:19:19 +02:00
r-a4base	bioconductor update (#5786)	2017-10-24 11:19:19 +02:00
r-a4classif	bioconductor update (#5786)	2017-10-24 11:19:19 +02:00
r-a4core	bioconductor update (#5786)	2017-10-24 11:19:19 +02:00
r-a4preproc	bioconductor update (#5786)	2017-10-24 11:19:19 +02:00
r-a4reporting	bioconductor update (#5786)	2017-10-24 11:19:19 +02:00
r-abadata	r-abadata: new package. (#5611)	2017-10-05 08:58:04 -06:00
r-abaenrichment	bioconductor update (#5786)	2017-10-24 11:19:19 +02:00
r-abind
r-absseq	bioconductor update (#5786)	2017-10-24 11:19:19 +02:00
r-acde	r-acde: Create new package. (#5616)	2017-10-05 10:21:17 -06:00
r-acepack	r-acepack: Create new package. (#5884)	2017-10-24 11:26:37 +02:00
r-acgh	bioconductor update (#5786)	2017-10-24 11:19:19 +02:00
r-acme	bioconductor update (#5786)	2017-10-24 11:19:19 +02:00
r-ada
r-adabag
r-ade4
r-adegenet
r-adsplit	bioconductor update (#5786)	2017-10-24 11:19:19 +02:00
r-affxparser	bioconductor update (#5786)	2017-10-24 11:19:19 +02:00
r-affy	r-affy: added versioned dependency on r (#5660)	2017-10-11 19:49:48 -06:00
r-affycomp	bioconductor update (#5786)	2017-10-24 11:19:19 +02:00
r-affycompatible	bioconductor update (#5786)	2017-10-24 11:19:19 +02:00
r-affycontam	bioconductor update (#5786)	2017-10-24 11:19:19 +02:00
r-affydata	r-affydata: Create new package. (#5665)	2017-10-09 17:05:21 -06:00
r-affyexpress	r-affyexpress: Create new package. (#5807)	2017-10-18 19:07:04 -06:00
r-affyilm	r-affyilm: Create new package. (#5810)	2017-10-18 19:06:16 -06:00
r-affyio	r-affyio: added versioned dependency on r (#5661)	2017-10-11 19:49:28 -06:00
r-affypdnn	r-affypdnn: Create new package. (#5826)	2017-10-24 11:12:47 +02:00
r-affyplm	r-affyplm: Create new package. (#5827)	2017-10-24 11:12:56 +02:00
r-affyqcreport	r-affyqcreport: Create new package. (#5829)	2017-10-24 11:13:44 +02:00
r-affyrnadegradation	r-affyrnadegradation: Create new package. (#5830)	2017-10-24 11:13:53 +02:00
r-annaffy	bioconductor update (#5786)	2017-10-24 11:19:19 +02:00
r-annotate	bioconductor update (#5786)	2017-10-24 11:19:19 +02:00
r-annotationdbi	bioconductor update (#5786)	2017-10-24 11:19:19 +02:00
r-ape
r-assertthat	r-assertthat: update version to 0.2.0 (#5435)	2017-09-23 14:58:53 +00:00
r-base64	r-base64: created new package (#5850)	2017-10-24 11:21:48 +02:00
r-base64enc
r-beanplot	r-beanplot: created new package (#5825)	2017-10-24 11:12:15 +02:00
r-bh	r-bh: update version. (#5442)	2017-09-23 15:01:35 +00:00
r-biobase	r-biobase: new package (#5398)	2017-09-20 19:00:56 -07:00
r-biocgenerics	r-biocgenerics: added version 0.22.1 and added versioned dependency on r (#5683)	2017-10-11 19:48:19 -06:00
r-biocinstaller	r-biocinstaller: added versioned dependency on r (#5663)	2017-10-11 19:49:08 -06:00
r-biocparallel	r-biocparallel: created new package (#5703)	2017-10-11 19:42:25 -06:00
r-biomart	r-biomart: added versioned dependency on r (#5666)	2017-10-11 19:41:08 -06:00
r-biostrings	r-biostrings: added versioned dependency on r (#5667)	2017-10-13 07:51:30 -06:00
r-bit	r-bit: new package. (#5436)	2017-09-23 14:59:09 +00:00
r-bit64	r-bit64: new package. (#5437)	2017-09-25 16:38:18 -06:00
r-bitops
r-blob	r-blob: new package. (#5438)	2017-09-25 14:41:18 -06:00
r-boot	r-boot: Update version to 1.3-20 (#5615)	2017-10-05 10:20:45 -06:00
r-brew
r-bumphunter	r-bumphunter: new package (#5824)	2017-10-24 11:09:38 +02:00
r-c50
r-car
r-caret
r-catools
r-checkmate	r-checkmate: Create new package. (#5880)	2017-10-24 11:25:24 +02:00
r-checkpoint
r-chron
r-class
r-cluster	r-cluster: Update version to 2.0.6. (#5618)	2017-10-05 10:21:44 -06:00
r-coda
r-codetools
r-coin
r-colorspace
r-corpcor
r-corrplot
r-crayon	r-crayon: Update version to 1.3.4 (#5854)	2017-10-24 11:23:00 +02:00
r-cubature
r-cubist
r-curl	r-curl: added list_url and version 3.0 (#5874)	2017-10-24 11:23:54 +02:00
r-data-table
r-dbi	r-dbi: updated to version 0.7 (#5537)	2017-09-28 22:14:56 -06:00
r-delayedarray	r-delayedarray: created new package (#5704)	2017-10-11 19:42:04 -06:00
r-deldir
r-dendextend
r-deoptim
r-deoptimr
r-devtools
r-diagrammer
r-dichromat
r-digest
r-diptest
r-domc
r-doparallel
r-dorng	r-dorng: created new package (#5740)	2017-10-13 07:47:01 -06:00
r-downloader	r-downloader: created new package (#5556)	2017-09-29 16:05:30 -06:00
r-dplyr	r-dplyr: Update version to 0.7.3 (#5531)	2017-09-28 13:09:30 -06:00
r-dt
r-dygraphs
r-e1071
r-edger	r-edger: added versioned dependency on r (#5669)	2017-10-13 18:32:43 -06:00
r-ellipse
r-ergm
r-evaluate	r-evaluate: Update version to 0.10.1. (#5847)	2017-10-24 11:20:47 +02:00
r-expm
r-factoextra
r-factominer
r-filehash
r-flashclust
r-flexmix
r-foreach
r-foreign
r-formatr	r-formatr: Update version to 1.5 (#5855)	2017-10-24 11:23:17 +02:00
r-formula
r-fpc
r-futile-logger	r-futile-logger: created new package (#5701)	2017-10-11 19:43:15 -06:00
r-futile-options	r-futile-options: created new package (#5699)	2017-10-11 19:43:53 -06:00
r-gbm	r-gbm: new package. (#5548)	2017-09-29 15:29:11 -06:00
r-gcrma	r-gcrma: added versioned dependency on r (#5670)	2017-10-12 16:18:30 -06:00
r-gdata	r-gdata: Update version to 2.18.0 (#5495)	2017-09-28 18:13:06 -07:00
r-genefilter	bioconductor update (#5786)	2017-10-24 11:19:19 +02:00
r-genomeinfodb	r-genomeinfodb: created new package (#5695)	2017-10-11 19:47:03 -06:00
r-genomeinfodbdata	r-genomeinfodbdata: added versioned dependency on r (#5685)	2017-10-11 19:48:00 -06:00
r-genomicfeatures	r-genomicfeatures: new package (#5811)	2017-10-18 19:05:53 -06:00
r-genomicranges	r-genomicranges: added new package (#5697)	2017-10-11 19:45:03 -06:00
r-geoquery	r-geoquery: created new package (#5879)	2017-10-24 11:25:02 +02:00
r-geosphere
r-ggmap
r-ggplot2
r-ggpubr
r-ggrepel
r-ggsci
r-ggvis	r-ggvis: Update version to 0.4.3 (#5532)	2017-09-28 13:13:47 -06:00
r-gistr
r-git2r
r-glmnet	r-glmnet: update version. (#5470)	2017-09-25 16:39:41 -06:00
r-gmodels
r-gmp
r-go-db	r-annaffy: new package. (#5414)	2017-09-28 12:49:31 -06:00
r-googlevis
r-gplots	r-gplots: Create New Package. (#5494)	2017-09-27 10:20:17 -06:00
r-gridbase
r-gridextra
r-gtable
r-gtools
r-hexbin
r-highr
r-hms	r-hms: created new package (#5638)	2017-10-06 20:12:59 -06:00
r-htmltable	r-htmltable: Create new package. (#5882)	2017-10-24 11:25:58 +02:00
r-htmltools	r-htmltools: Update version to 0.3.6 (#5528)	2017-09-28 11:31:16 -06:00
r-htmlwidgets	r-htmlwidgets: Update verion to 0.9 (#5881)	2017-10-24 11:25:42 +02:00
r-httpuv	r-httpuv: Update version to 1.3.5 (#5527)	2017-09-28 11:30:57 -06:00
r-httr	r-httr: added list_url and version 1.3.1 (#5877)	2017-10-24 11:24:29 +02:00
r-hwriter	r-hwriter: new package. (#5549)	2017-09-29 15:29:26 -06:00
r-igraph
r-illuminaio	r-illuminaio: created new package (#5849)	2017-10-24 11:21:31 +02:00
r-influencer
r-inline
r-ipred
r-iranges	r-annotationdbi: new package (#5408)	2017-09-25 16:37:31 -06:00
r-irdisplay
r-irkernel
r-irlba
r-iterators
r-jpeg
r-jsonlite	r-jsonlite: Update version to 1.5 (#5524)	2017-09-28 11:28:49 -06:00
r-kegg-db	r-annaffy: new package. (#5414)	2017-09-28 12:49:31 -06:00
r-kernlab
r-kernsmooth
r-kknn
r-knitr	r-knitr: Update version to 1.17. (#5878)	2017-10-24 11:24:45 +02:00
r-labeling
r-lambda-r	r-lambda-r: created new package (#5700)	2017-10-11 19:43:33 -06:00
r-laplacesdemon
r-lattice	r-glmnet: update version. (#5470)	2017-09-25 16:39:41 -06:00
r-latticeextra	r-latticeextra: Create new package. (#5883)	2017-10-24 11:26:20 +02:00
r-lava
r-lazyeval
r-leaflet
r-leaps
r-learnbayes
r-limma	bioconductor update (#5786)	2017-10-24 11:19:19 +02:00
r-lme4
r-lmtest
r-locfit	r-locfit: created new package (#5572)	2017-10-02 15:54:26 -06:00
r-lpsolve
r-lubridate
r-magic
r-magrittr
r-mapproj
r-maps
r-maptools
r-markdown	r-markdown: Update version to 0.8. (#5851)	2017-10-24 11:22:05 +02:00
r-mass
r-matrix	r-glmnet: update version. (#5470)	2017-09-25 16:39:41 -06:00
r-matrixmodels
r-matrixstats	r-matrixstats: created new package (#5682)	2017-10-11 19:48:39 -06:00
r-mclust
r-mda
r-memoise	r-memoise: update version. (#5440)	2017-09-23 15:00:50 +00:00
r-mgcv
r-mime
r-minqa
r-mlbench
r-mlinterfaces	bioconductor update (#5786)	2017-10-24 11:19:19 +02:00
r-modelmetrics
r-modeltools
r-mpm	r-mpm: new package. (#5416)	2017-09-21 13:36:51 -07:00
r-multcomp
r-multtest	bioconductor update (#5786)	2017-10-24 11:19:19 +02:00
r-munsell
r-mvtnorm
r-ncdf4
r-network
r-networkd3
r-nlme
r-nloptr
r-nmf
r-nnet
r-nor1mix	r-nor1mix: created new package (#5828)	2017-10-24 11:13:04 +02:00
r-np
r-numderiv
r-openssl
r-packrat
r-pacman
r-pamr	r-pamr: new package (#5514)	2017-09-27 21:48:04 -06:00
r-party
r-partykit
r-pbdzmq
r-pbkrtest
r-permute
r-pkgconfig	r-pkgconfig: new package. (#5441)	2017-09-25 16:38:45 -06:00
r-pkgmaker
r-plogr	r-plogr: new package. (#5443)	2017-09-25 16:42:03 -06:00
r-plotrix
r-pls
r-plyr
r-png
r-prabclus
r-praise
r-preprocesscore	r-preprocesscore: added versioned dependency on r (#5671)	2017-10-13 18:50:26 -06:00
r-prodlim
r-proto
r-pryr
r-quadprog
r-quantmod
r-quantreg
r-r6	r-r6: Update version to 2.2.2 (#5529)	2017-09-28 12:46:11 -06:00
r-randomforest
r-raster
r-rbokeh
r-rcolorbrewer
r-rcpp	r-rcpp: Update version to 0.12.13 (#5526)	2017-09-28 11:30:25 -06:00
r-rcpparmadillo	r-rcpparmadillo: Create new package. (#5875)	2017-10-24 11:24:16 +02:00
r-rcppeigen
r-rcurl	r-rcurl: created new package (#5492)	2017-09-26 17:49:54 -06:00
r-rda	r-rda: new package. (#5523)	2017-09-28 11:28:29 -06:00
r-readr	r-readr: created new package (#5741)	2017-10-13 07:47:43 -06:00
r-registry
r-repr
r-reshape2
r-rgl
r-rgooglemaps
r-rinside
r-rjava
r-rjson
r-rjsonio
r-rlang	r-adsplit: Create new package and update version for its dependencies. (#5640)	2017-10-09 17:10:29 -06:00
r-rmarkdown
r-rminer
r-rmpfr
r-rmpi	r-rmpi: added list_url and updated md5 (#5698)	2017-10-13 18:35:06 -06:00
r-rmysql
r-rngtools
r-robustbase
r-rocr	r-rocr: new package. (#5513)	2017-09-27 21:47:47 -06:00
r-rodbc
r-roxygen2
r-rpart
r-rpart-plot
r-rpostgresql
r-rsamtools	r-rsamtools: created new package (#5702)	2017-10-11 19:42:55 -06:00
r-rsnns
r-rsqlite	r-rsqlite: Update version to 2.0. (#5444)	2017-09-23 15:02:27 +00:00
r-rstan
r-rstudioapi
r-rtracklayer	r-rtracklayer: new package (#5808)	2017-10-18 19:06:36 -06:00
r-rzmq
r-s4vectors	r-s4vectors: added versioned dependency on r (#5672)	2017-10-13 18:32:17 -06:00
r-sandwich
r-scales
r-scatterplot3d
r-segmented
r-seqinr
r-sfsmisc	r-sfsmisc: new package. (#5516)	2017-09-27 22:16:02 -06:00
r-shiny	r-shiny: update version to 1.0.5 (#5530)	2017-09-28 11:31:27 -06:00
r-siggenes	r-siggenes: new package (#5831)	2017-10-24 11:14:04 +02:00
r-simpleaffy	r-simpleaffy: added versioned dependency on r (#5673)	2017-10-12 16:18:15 -06:00
r-snow
r-sourcetools	r-sourcetools: Create new package. (#5853)	2017-10-24 11:22:42 +02:00
r-sp
r-sparsem
r-spdep
r-stanheaders
r-statnet-common
r-stringi	r-stringi: added list_url and version 1.1.5 and 1.1.3 (#5737)	2017-10-13 07:45:26 -06:00
r-stringr	r-stringr: added list_url and version 1.2.0 (#5738)	2017-10-13 07:46:29 -06:00
r-strucchange
r-summarizedexperiment	r-summarizedexperiment: created new package (#5734)	2017-10-13 07:45:05 -06:00
r-survey
r-survival	r-survival: updated to version 2.41-3 (#5409)	2017-09-20 18:42:16 -06:00
r-tarifx
r-testit	r-testit: Update version to 0.7 (#5852)	2017-10-24 11:22:23 +02:00
r-testthat
r-th-data
r-threejs	r-threejs: Correct url. (#5553)	2017-09-29 15:33:05 -06:00
r-tibble	r-tibble: added dependency r-rlang (#5536)	2017-10-04 09:59:40 -07:00
r-tidyr
r-trimcluster
r-trust
r-ttr
r-uuid
r-varselrf	r-varselrf: new package. (#5515)	2017-09-27 21:48:22 -06:00
r-vcd
r-vegan
r-viridis
r-viridislite
r-visnetwork
r-whisker
r-withr
r-xgboost
r-xlconnect
r-xlconnectjars
r-xlsx
r-xlsxjars
r-xml	r-xml: updated url and added version 3.98-1.9 (#5466)	2017-09-25 16:46:01 -06:00
r-xtable
r-xts
r-xvector	r-xvector: added versioned dependency on r (#5731)	2017-10-13 16:01:18 -06:00
r-yaml	r-yaml: Update version to 2.1.14 (#5856)	2017-10-24 11:23:38 +02:00
r-yaqcaffy	r-yaqcaffy: added list_url and versioned dependency on r (#5730)	2017-10-13 07:44:26 -06:00
r-zlibbioc	r-zlibbioc: added versioned dependency on r (#5674)	2017-10-13 07:50:10 -06:00
r-zoo
raft
raja
randfold	mirdeep: new package (#5302)	2017-09-20 15:48:20 -07:00
random123
randrproto
ravel
raxml
ray
rdp-classifier
readline
recordproto
redundans
relion
rempi
rename
rendercheck
renderproto
resourceproto
revbayes
rgb
rhash
rockstar
root
rose
rr
rsbench
rsem
rstart
rsync
rtags
rtax
ruby
rust
rust-bindgen
sabre
salmon
sambamba	[WIP]: Sambamba new package (#5304)	2017-09-20 18:23:49 -06:00
samrai
samtools	samtools: add version 1.6 + some fixes (#5715)	2017-10-12 10:08:31 -06:00
sandbox	Add the Sandbox package (#5595)	2017-10-04 18:40:03 -07:00
sas
satsuma2
savanna
saws
sbt
scala
scalasca
scons
scorec-core
scorep	Improve scorep package with different compilers and mpi providers (#5386)	2017-09-18 13:35:42 -07:00
scotch
scr
screen
scripts
scrnsaverproto
sctk
sdl2
sdl2-image
sed
seqprep
seqtk
serf
sessreg
setxkbmap
sga
shapeit
shared-mime-info	Missing perl dependencies (#5204)	2017-09-26 07:27:28 -06:00
shiny-server
shortstack
showfont
sickle
signalp
silo	Update pic/shared variants for hdf5, python, silo (#5423)	2017-09-21 18:14:31 -07:00
simplemoc
simul
simulationio
singularity	singularity 2.4 added (#5782)	2017-10-17 01:28:19 -07:00
slepc	slepc: refine version constraints for petsc 3.8 (#5752)	2017-10-13 07:11:17 -06:00
slurm
smalt
smc	add newlines at end of some package files	2017-10-24 10:05:36 +02:00
smproxy
snakemake
snap
snap-berkeley
snap-korf	snap-korf: new package (#5589)	2017-10-10 11:09:31 -07:00
snappy	snappy: Build shared library by default (#5534)	2017-09-28 14:18:50 -06:00
snbone
sniffles
snptest
soap2
soapindel
soapsnp
somatic-sniper
sortmerna
sowing
sox
spades
spark
sparsehash
sparta
spdlog
spectrum-mpi
speex
sph2pipe
spherepack
spindle
spot
sqlite
squid	mirdeep: new package (#5302)	2017-09-20 15:48:20 -07:00
sra-toolkit	sra-toolkit: new package (#5588)	2017-10-03 14:41:41 -06:00
sspace-longread
sspace-standard
sst-dumpi
sst-macro
stacks
staden-io-lib
star
star-ccm-plus
stat
stc
stream
strelka	Strelka depends on boost 1.56.0 *or newer* (#5690)	2017-10-11 17:21:26 -06:00
stress
stringtie
structure
sublime-text
subread
subversion
suite-sparse
sumaclust
sundials	Update Sundials package (#5696)	2017-10-13 21:13:10 -06:00
superlu
superlu-dist	superlu_dist: update to latest version 5.2.1 (#5762)	2017-10-13 21:22:44 -06:00
superlu-mt
swarm
swiftsim
swig
symengine
sympol
sz	SZ: add version 1.4.11 (#5517)	2017-09-27 16:30:43 -07:00
tabix
talloc
tar
targetp	targetp: new package (#5334)	2017-09-19 13:58:07 -07:00
task
taskd
tassel	tassel: new package (#5583)	2017-10-04 10:28:28 -06:00
tau
tcl
tcoffee
tcsh	Patches are hashed with specs, and can be associated with dependencies.	2017-09-30 02:06:59 -07:00
tealeaf
tetgen
tethex
texinfo
texlive	Use trusted/historic site for texlive installer (#5347)	2017-09-21 07:22:09 -06:00
the-platinum-searcher
the-silver-searcher	The silver searcher: new version (#5630)	2017-10-06 13:56:58 -06:00
thrift
tig
tinyxml
tinyxml2
tk
tmalign
tmhmm	tmhmm: new package (#5335)	2017-09-20 14:45:13 -07:00
tmux	tmux: add version 2.5 (#5449)	2017-09-22 19:30:47 -07:00
tmuxinator
tophat
tppred
transabyss
transdecoder
transposome
transset
trapproto
tree
triangle
trilinos	flake8: fix warnings (#5759)	2017-10-13 15:16:58 -06:00
trimgalore
trimmomatic
turbine
turbomole
tut	Modulefiles generated with a template engine (#3183)	2017-09-19 12:34:20 -07:00
twm
tycho2	tycho2: initial commit (#5196)	2017-09-28 14:48:54 -07:00
uberftp
udunits2
uncrustify
unibilium
unison
units
unixodbc
usearch
util-linux
util-macros
uuid
valgrind
vampirtrace
vardictjava	Add a package for VarDictJava@1.5.1 (#5626)	2017-10-06 13:58:34 -06:00
varscan
vc
vcftools
vcsh
vdt
vecgeom
veclibfort
vegas2
velvet
videoproto
viennarna
viewres
vim
virtualgl
visit
vizglow
vmatch
voropp
votca-csg
votca-ctp
votca-moo
votca-tools
votca-xtp	votca-xtp: added url (#5772)	2017-10-17 01:39:02 -07:00
vpfft
vpic
vsearch
vtk
wannier90
wget
windowswmproto
wt
wx
wxpropgrid
x11perf
xapian-core
xauth
xbacklight
xbiff
xbitmaps
xcalc
xcb-demo
xcb-proto
xcb-util
xcb-util-cursor
xcb-util-errors
xcb-util-image
xcb-util-keysyms
xcb-util-renderutil
xcb-util-wm
xclipboard
xclock
xcmiscproto
xcmsdb
xcompmgr
xconsole
xcursor-themes
xcursorgen
xdbedizzy
xditview
xdm
xdpyinfo
xdriinfo
xedit
xerces-c	xerces-c: Fix url (#5597)	2017-10-04 10:25:31 -06:00
xev
xextproto
xeyes
xf86bigfontproto
xf86dga
xf86dgaproto
xf86driproto
xf86miscproto
xf86rushproto
xf86vidmodeproto
xfd
xfindproxy
xfontsel
xfs
xfsinfo
xfwp
xgamma
xgc
xhost
xineramaproto
xinit
xinput
xkbcomp
xkbdata
xkbevd
xkbprint
xkbutils
xkeyboard-config
xkill
xload
xlogo
xlsatoms
xlsclients
xlsfonts
xmag
xman
xmessage
xmh
xmlto
xmodmap
xmore
xorg-cf-files
xorg-docs
xorg-gtest
xorg-server
xorg-sgml-doctools
xphelloworld
xplor-nih
xplsprinters
xpr
xprehashprinterlist
xprop
xproto
xproxymanagementprotocol
xqilla
xrandr
xrdb
xrefresh
xrootd
xrx
xsbench	xsbench: add v14 (#5835)	2017-10-20 08:52:17 +02:00
xscope
xsdk
xsdktrilinos
xset
xsetmode
xsetpointer
xsetroot
xsm
xstdcmap
xterm
xtrans
xtrap
xts
xvidtune
xvinfo
xwd
xwininfo
xwud
xz
yajl	Added Spackage for YAJL (#5566)	2017-10-02 12:50:55 -06:00
yaml-cpp
yasm
yorick
z3
zeromq
zfp
zip
zlib
zoltan
zsh
zstd