50 lines
2.5 KiB
Python
50 lines
2.5 KiB
Python
# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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class RGviz(RPackage):
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"""Plotting data and annotation information along genomic coordinates.
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Genomic data analyses requires integrated visualization of known genomic
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information and new experimental data. Gviz uses the biomaRt and the
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rtracklayer packages to perform live annotation queries to Ensembl and
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UCSC and translates this to e.g. gene/transcript structures in viewports
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of the grid graphics package. This results in genomic information
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plotted together with your data."""
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homepage = "https://bioconductor.org/packages/Gviz"
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git = "https://git.bioconductor.org/packages/Gviz.git"
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version('1.28.3', commit='20b9825af144cfc888629c34aa980b5bbd65bf86')
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version('1.26.5', commit='430310b9d2e098f9757a71d26a2f69871071f30c')
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version('1.24.0', commit='3ee1eec97a56653c07c434a97f82cfe3c4281841')
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version('1.22.3', commit='2238079d0a7017c474f010acb35d98ee7cc1c5d1')
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version('1.20.0', commit='299b8255e1b03932cebe287c3690d58c88f5ba5c')
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depends_on('r@2.10.0:', type=('build', 'run'))
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depends_on('r-s4vectors@0.9.25:', type=('build', 'run'))
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depends_on('r-iranges@1.99.18:', type=('build', 'run'))
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depends_on('r-genomicranges@1.17.20:', type=('build', 'run'))
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depends_on('r-xvector@0.5.7:', type=('build', 'run'))
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depends_on('r-rtracklayer@1.25.13:', type=('build', 'run'))
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depends_on('r-lattice', type=('build', 'run'))
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depends_on('r-rcolorbrewer', type=('build', 'run'))
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depends_on('r-biomart@2.11.0:', type=('build', 'run'))
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depends_on('r-annotationdbi@1.27.5:', type=('build', 'run'))
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depends_on('r-biobase@2.15.3:', type=('build', 'run'))
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depends_on('r-genomicfeatures@1.17.22:', type=('build', 'run'))
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depends_on('r-bsgenome@1.33.1:', type=('build', 'run'))
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depends_on('r-biostrings@2.33.11:', type=('build', 'run'))
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depends_on('r-biovizbase@1.13.8:', type=('build', 'run'))
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depends_on('r-rsamtools@1.17.28:', type=('build', 'run'))
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depends_on('r-latticeextra@0.6-26:', type=('build', 'run'))
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depends_on('r-matrixstats@0.8.14:', type=('build', 'run'))
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depends_on('r-genomicalignments@1.1.16:', type=('build', 'run'))
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depends_on('r-genomeinfodb@1.1.3:', type=('build', 'run'))
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depends_on('r-biocgenerics@0.11.3:', type=('build', 'run'))
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depends_on('r-digest@0.6.8:', type=('build', 'run'))
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