33 lines
1.5 KiB
Python
33 lines
1.5 KiB
Python
# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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class RSctransform(RPackage):
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"""A normalization method for single-cell UMI count data using a variance
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stabilizing transformation. The transformation is based on a negative
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binomial regression model with regularized parameters. As part of the same
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regression framework, this package also provides functions for batch
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correction, and data correction. See Hafemeister and Satija 2019
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<doi:10.1101/576827> for more details."""
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homepage = "https://github.com/ChristophH/sctransform"
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url = "https://cloud.r-project.org/src/contrib/sctransform_0.2.0.tar.gz"
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list_url = "https://cloud.r-project.org/src/contrib/Archive/sctransform"
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version('0.2.0', sha256='d7f4c7958693823454f1426b23b0e1e9c207ad61a7a228602a1885a1318eb3e4')
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depends_on('r@3.0.2:', type=('build', 'run'))
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depends_on('r-mass', type=('build', 'run'))
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depends_on('r-matrix', type=('build', 'run'))
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depends_on('r-future', type=('build', 'run'))
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depends_on('r-future-apply', type=('build', 'run'))
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depends_on('r-ggplot2', type=('build', 'run'))
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depends_on('r-reshape2', type=('build', 'run'))
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depends_on('r-gridextra', type=('build', 'run'))
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depends_on('r-rcpp@0.11.0:', type=('build', 'run'))
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depends_on('r-rcppeigen', type=('build', 'run'))
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