51 lines
2.1 KiB
Python
51 lines
2.1 KiB
Python
##############################################################################
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# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
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# Produced at the Lawrence Livermore National Laboratory.
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#
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# This file is part of Spack.
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# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
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# LLNL-CODE-647188
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#
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# For details, see https://github.com/llnl/spack
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# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
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#
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# This program is free software; you can redistribute it and/or modify
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# it under the terms of the GNU Lesser General Public License (as
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# published by the Free Software Foundation) version 2.1, February 1999.
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#
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# This program is distributed in the hope that it will be useful, but
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# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
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# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
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# conditions of the GNU Lesser General Public License for more details.
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#
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# You should have received a copy of the GNU Lesser General Public
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# License along with this program; if not, write to the Free Software
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# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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##############################################################################
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from spack import *
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class Poamsa(MakefilePackage):
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"""POA is Partial Order Alignment, a fast program for multiple sequence
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alignment in bioinformatics. Its advantages are speed, scalability,
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sensitivity, and the superior ability to handle branching / indels
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in the alignment."""
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homepage = "https://sourceforge.net/projects/poamsa"
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url = "https://downloads.sourceforge.net/project/poamsa/poamsa/2.0/poaV2.tar.gz"
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version('2.0', '9e2eb270d4867114406f53dab1311b2b')
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def url_for_version(self, version):
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url = "https://downloads.sourceforge.net/project/poamsa/poamsa/{0}/poaV{1}.tar.gz"
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return url.format(version.dotted, version.up_to(1))
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def build(self, spec, prefix):
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make('poa')
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def install(self, spec, prefix):
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mkdirp(prefix.bin)
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mkdirp(prefix.lib)
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install('poa', prefix.bin)
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install('liblpo.a', prefix.lib)
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