44 lines
1.9 KiB
Python
44 lines
1.9 KiB
Python
# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other
|
|
# Spack Project Developers. See the top-level COPYRIGHT file for details.
|
|
#
|
|
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
|
|
|
|
from spack import *
|
|
|
|
|
|
class RDose(RPackage):
|
|
"""Disease Ontology Semantic and Enrichment analysis.
|
|
|
|
This package implements five methods proposed by Resnik, Schlicker,
|
|
Jiang, Lin and Wang respectively for measuring semantic similarities
|
|
among DO terms and gene products. Enrichment analyses including
|
|
hypergeometric model and gene set enrichment analysis are also
|
|
implemented for discovering disease associations of high-throughput
|
|
biological data."""
|
|
|
|
homepage = "https://bioconductor.org/packages/DOSE"
|
|
git = "https://git.bioconductor.org/packages/DOSE.git"
|
|
|
|
version('3.10.2', commit='5ea51a2e2a04b4f3cc974cecb4537e14efd6a7e3')
|
|
version('3.8.2', commit='4d3d1ca710aa7e4288a412c8d52b054b86a57639')
|
|
version('3.6.1', commit='f2967f0482cea39222bfd15767d0f4a5994f241b')
|
|
version('3.4.0', commit='dabb70de1a0f91d1767601e871f2f1c16d29a612')
|
|
version('3.2.0', commit='71f563fc39d02dfdf65184c94e0890a63b96b86b')
|
|
|
|
depends_on('r@3.3.1:', type=('build', 'run'))
|
|
depends_on('r-annotationdbi', type=('build', 'run'))
|
|
depends_on('r-biocparallel', type=('build', 'run'))
|
|
depends_on('r-do-db', type=('build', 'run'))
|
|
depends_on('r-fgsea', type=('build', 'run'))
|
|
depends_on('r-ggplot2', type=('build', 'run'))
|
|
depends_on('r-gosemsim@2.0.0:', type=('build', 'run'))
|
|
depends_on('r-igraph', when='@3.2.0:3.4.0', type=('build', 'run'))
|
|
depends_on('r-qvalue', type=('build', 'run'))
|
|
depends_on('r-reshape2', type=('build', 'run'))
|
|
depends_on('r-s4vectors', type=('build', 'run'))
|
|
depends_on('r-scales', when='@3.2.0:3.4.0', type=('build', 'run'))
|
|
|
|
depends_on('r-rvcheck', when='@3.4.0', type=('build', 'run'))
|
|
|
|
depends_on('r@3.4.0:', when='@3.6.1:', type=('build', 'run'))
|