a8ccb8e116
- [x] add `concretize.lp`, `spack.yaml`, etc. to licensed files
- [x] update all licensed files to say 2013-2021 using
`spack license update-copyright-year`
- [x] appease mypy with some additions to package.py that needed
for oneapi.py
31 lines
1.0 KiB
Python
31 lines
1.0 KiB
Python
# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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class Vegas2(Package):
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""""VEGAS2 is an extension that uses 1,000 Genomes data to model SNP
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correlations across the autosomes and chromosome X"""
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homepage = "https://vegas2.qimrberghofer.edu.au/"
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url = "https://vegas2.qimrberghofer.edu.au/vegas2v2"
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version('2', sha256='dc85834219141a4e9a246391b48185a739223a5e00b1b1c4d2517822388278ba', expand=False)
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depends_on('perl', type='run')
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depends_on('r', type='run')
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depends_on('plink')
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depends_on('r-mvtnorm', type='run')
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depends_on('r-corpcor', type='run')
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def url_for_version(self, version):
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url = 'https://vegas2.qimrberghofer.edu.au/vegas2v{0}'
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return url.format(version)
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def install(self, spec, prefix):
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mkdirp(prefix.bin)
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install('vegas2v{0}'.format(self.version), prefix.bin)
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