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abinit
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abyss
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ack
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activeharmony
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adept-utils
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adios
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Add Maintainer (#6575)
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2017-12-05 14:27:56 -07:00 |
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adios2
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Add Maintainer (#6575)
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2017-12-05 14:27:56 -07:00 |
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adlbx
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adol-c
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albert
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alglib
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allinea-forge
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allinea-reports
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allpaths-lg
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alquimia
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Xsdk 0.3.0 (#6277)
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2017-11-27 22:08:08 -08:00 |
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alsa-lib
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amg
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amg2013
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amp
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Adding new package amp (#6471)
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2017-11-27 14:43:03 -07:00 |
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ampliconnoise
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amr-exp-parabolic
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amrex
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andi
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angsd
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ant
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antlr
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ape
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apex
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applewmproto
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appres
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apr
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apr-util
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archer
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argtable
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arlecore
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armadillo
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arpack-ng
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ascent
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updates to conduit and ascent packages (new PR) (#6584)
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2017-12-08 13:43:12 -08:00 |
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asciidoc
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aspa
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aspell
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aspell6-de
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aspell6-en
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aspell6-es
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assimp
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astra
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astral
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astyle
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atk
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atlas
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atom-dft
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atom-dft: new package plus dependencies (#6653)
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2018-01-02 20:32:37 -06:00 |
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atompaw
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atop
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augustus
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adding specific version url for augustus 3.3 due to old folder structure (#6813)
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2018-01-02 19:24:28 -06:00 |
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autoconf
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autodock-vina
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autogen
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automaded
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automake
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bamtools
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bamtools: Add version 2.5.1 (#6770)
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2018-01-02 10:55:07 -08:00 |
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bamutil
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bash
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bash-completion
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bats
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bazel
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bazel: include SPACK_DEBUG_LOG_ID in environment (#6562)
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2017-12-11 10:34:06 -08:00 |
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bbcp
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bbmap
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bcftools
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bcl2fastq2
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bdftopcf
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bdw-gc
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bear
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beast2
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bedtools2
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bedtools2: Add version 2.27.1 (#6693)
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2017-12-16 19:36:35 -07:00 |
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beforelight
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benchmark
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berkeley-db
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bertini
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bib2xhtml
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bigreqsproto
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binutils
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bioawk
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biopieces
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new packages: biopieces and dependencies (#6478)
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2017-12-12 18:35:13 -08:00 |
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bison
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bitmap
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blast-plus
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blat
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blaze
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bliss
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blitz
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bml
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bohrium
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add OctavePackage (#6746)
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2018-01-02 20:03:27 -06:00 |
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boost
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new package: Percept (#6636)
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2017-12-14 18:11:47 -08:00 |
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boostmplcartesianproduct
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bowtie
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bowtie2
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boxlib
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bpp-core
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bpp-phyl
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bpp-seq
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bpp-suite
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braker
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branson
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breakdancer
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added breakdancer (#6319)
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2017-12-14 14:43:32 -07:00 |
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breseq
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breseq: Create new package (#6648)
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2017-12-16 19:47:11 -07:00 |
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brigand
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bsseeker2
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bucky
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busco
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butter
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bwa
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bwa: added version 0.7.16a and checksum (#6658)
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2017-12-16 19:43:02 -07:00 |
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byobu
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bzip2
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c-blosc
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c-blosc: 1.12.1 (#6571)
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2017-12-05 12:49:22 +01:00 |
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caffe
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cairo
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caliper
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Caliper update, add version 1.6.0 (#6680)
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2017-12-16 19:39:52 -07:00 |
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callpath
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candle-benchmarks
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Candle benchmarks update (#6619)
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2017-12-08 10:34:49 +01:00 |
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cantera
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canu
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cap3
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cares
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cask
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catch
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cbench
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cblas
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cbtf
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cbtf-argonavis
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cbtf-argonavis-gui
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cbtf-krell
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cbtf-lanl
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ccache
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cctools
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cdbfasta
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cdd
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cddlib
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cdhit
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cdo
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Package 'cdo': get rid of unnecessary dependency on MPI C++ library. (#6632)
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2017-12-16 19:48:56 -07:00 |
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cereal
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cfitsio
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cgal
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Fix CGAL checksum and switch to more stable URL (#6511)
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2017-11-30 09:18:54 +01:00 |
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cgm
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cgns
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Update CGNS and add CGNS capability to Trilinos (#6568)
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2017-12-05 14:33:36 -07:00 |
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charm
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check
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chlorop
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chombo
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cityhash
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clamr
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cleaveland4
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cleverleaf
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clfft
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clhep
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cloc
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cloog
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cloverleaf
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cloverleaf3d
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clustalo
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clustalw
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cmake
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cmocka
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cmor
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cnmem
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cnpy
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cns-nospec
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cntk
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cntk1bitsgd
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codar-cheetah
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coevp
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cohmm
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coinhsl
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CoinHSL : Prevent CoinHSL from building in parallel (#6715)
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2017-12-19 08:30:39 +01:00 |
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comd
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compiz
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compositeproto
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conduit
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updates to conduit and ascent packages (new PR) (#6584)
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2017-12-08 13:43:12 -08:00 |
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constype
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converge
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coreutils
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corset
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cosmomc
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cosp2
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cp2k
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cppad
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cppcheck
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cpprestsdk
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cppunit
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cppzmq
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cram
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cryptopp
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cscope
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csdp
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cub
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cube
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cuda
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CUDA: 9.1 (#6663)
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2017-12-13 14:43:40 +01:00 |
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cuda-memtest
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Add Maintainer (#6575)
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2017-12-05 14:27:56 -07:00 |
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cudnn
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cufflinks
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cups
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curl
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cvs
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czmq
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dakota
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daligner
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damageproto
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damselfly
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darshan-runtime
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darshan-util
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dash
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datamash
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dataspaces
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dbus
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dealii
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add OctavePackage (#6746)
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2018-01-02 20:03:27 -06:00 |
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dejagnu
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delly2
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denovogear
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DeNovoGear: Create new package (#6699)
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2017-12-16 19:34:53 -07:00 |
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dia
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dialign-tx
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diamond
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new package: DIAMOND (#6793)
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2018-01-02 12:03:45 -08:00 |
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direnv
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discovar
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dlpack
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dmlc-core
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dmxproto
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docbook-xml
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docbook-xsl
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dos2unix
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double-conversion
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doxygen
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dri2proto
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dri3proto
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dtcmp
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dyninst
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ea-utils
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easybuild
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ebms
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eccodes
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Update for 'eccodes'. (#6604)
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2017-12-08 09:34:37 +01:00 |
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ecp-proxy-apps
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editres
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eigen
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elemental
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elfutils
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elk
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elpa
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emacs
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Emacs: added gnutls variant (tested on Centos 7) (#6711)
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2017-12-19 08:36:54 +01:00 |
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emboss
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encodings
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environment-modules
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es
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esmf
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Esmf fixes for Cray, OSX and mpich (#6768)
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2018-01-02 19:43:55 -06:00 |
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espresso
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etsf-io
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everytrace
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everytrace-example
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evieext
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exabayes
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exampm
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exasp2
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exmcutils
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exodusii
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exonerate
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expat
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expect
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express
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extrae
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exuberant-ctags
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f90cache
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falcon
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farmhash
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fastjar
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fastmath
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fastme
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fastphase
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fastq-screen
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fastqc
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fastqvalidator
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fasttree
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Feature/fasttree (#6227)
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2017-12-20 19:10:24 -08:00 |
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fastx-toolkit
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fenics
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ferret
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ffmpeg
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fftw
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fftw: added version 3.3.7 (#6678)
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2017-12-14 21:38:33 +01:00 |
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fimpute
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findutils
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fio
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fish
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Update fish to 2.7.0 (#6608)
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2017-12-08 10:15:40 +01:00 |
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fixesproto
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flac
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flang
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clang,flang: update CC, CXX environment in installation module (#6737)
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2017-12-22 07:32:10 +01:00 |
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flann
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flash
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flecsale
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flecsi
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flex
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Flex v2.6.4 conflicts with gcc@7.2.0 (#6819)
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2018-01-03 09:46:57 -06:00 |
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flint
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flit
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Flit package (#6260)
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2017-11-30 09:05:40 +01:00 |
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fltk
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flux
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fmt
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foam-extend
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ENH: improved openfoam module creation (issue #4942)
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2017-12-20 11:32:33 -08:00 |
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folly
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font-adobe-75dpi
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font-adobe-100dpi
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font-adobe-utopia-75dpi
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font-adobe-utopia-100dpi
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font-adobe-utopia-type1
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font-alias
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font-arabic-misc
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font-bh-75dpi
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font-bh-100dpi
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font-bh-lucidatypewriter-75dpi
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font-bh-lucidatypewriter-100dpi
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font-bh-ttf
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font-bh-type1
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font-bitstream-75dpi
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font-bitstream-100dpi
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font-bitstream-speedo
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font-bitstream-type1
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font-cronyx-cyrillic
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font-cursor-misc
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font-daewoo-misc
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font-dec-misc
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font-ibm-type1
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font-isas-misc
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font-jis-misc
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font-micro-misc
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font-misc-cyrillic
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font-misc-ethiopic
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font-misc-meltho
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font-misc-misc
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font-mutt-misc
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font-schumacher-misc
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font-screen-cyrillic
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font-sony-misc
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font-sun-misc
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font-util
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font-winitzki-cyrillic
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font-xfree86-type1
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fontcacheproto
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fontconfig
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fontsproto
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fonttosfnt
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fpc
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freebayes
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freetype
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fseq
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fsl
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fslsfonts
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fstobdf
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funhpc
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gapbs
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gapcloser
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gapfiller
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gasnet
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gatk
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gatk: boilerplate cleanup (#6744)
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2018-01-02 20:05:04 -06:00 |
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gaussian
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gawk
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gblocks
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gcc
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gcc: remove all variant (#5283)
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2017-12-03 10:19:55 +01:00 |
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gccmakedep
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gccxml
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gconf
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gdal
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gdb
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Added GDB verison 8.0 (#6704)
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2017-12-19 09:54:18 +01:00 |
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gdbm
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gdk-pixbuf
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geant4
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gearshifft
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Add Maintainer (#6575)
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2017-12-05 14:27:56 -07:00 |
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gemmlowp
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genemark-et
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genometools
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geos
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gettext
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gflags
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ghostscript
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ghostscript-fonts
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giflib
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git
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git: Update to 2.15.1 (#6642)
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2017-12-11 17:26:53 -07:00 |
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git-lfs
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gl2ps
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glew
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glib
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glm
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global
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globalarrays
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globus-toolkit
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globus-toolkit: add version and openssl dependency (#6617)
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2017-12-18 15:23:56 -08:00 |
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glog
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glpk
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glproto
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gmake
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gmap-gsnap
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gmap-gsnap: adding version 2014_12_28 (#6720)
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2017-12-22 06:56:58 +01:00 |
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gmime
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gmp
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gmsh
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gmsh: add 3.0.6 (#6718)
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2017-12-19 08:31:23 +01:00 |
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gnat
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gnu-prolog
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gnupg
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Update gnupg to 2.2.3 (#6573)
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2017-12-05 14:29:20 -07:00 |
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gnuplot
|
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|
|
gnutls
|
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go
|
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go-bootstrap
|
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|
gobject-introspection
|
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|
|
googletest
|
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gotcha
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gource
|
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|
gperf
|
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gperftools
|
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grackle
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gradle
|
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grandr
|
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|
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graphlib
|
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graphmap
|
|
|
|
graphviz
|
|
|
|
grib-api
|
Update for 'grib-api'. (#6605)
|
2017-12-08 09:33:30 +01:00 |
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groff
|
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gromacs
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gsl
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gtkorvo-atl
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gtkorvo-cercs-env
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gtkorvo-dill
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gtkorvo-enet
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gtkplus
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gts
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guidance
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guile
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h5hut
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h5part
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h5utils
|
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h5z-zfp
|
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hacckernels
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hadoop
|
Hadoop: Replace broken url (#6671)
|
2017-12-16 19:42:03 -07:00 |
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hapcut2
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haploview
|
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harfbuzz
|
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harminv
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hdf
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|
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|
hdf5
|
Provide a patch to allow hdf5@1.10.1 to build with intel/18.0.1. (#6583)
|
2017-12-08 09:55:06 +01:00 |
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hdf5-blosc
|
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help2man
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hepmc
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heppdt
|
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highfive
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highwayhash
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hisat2
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hmmer
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hoomd-blue
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hpccg
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hpctoolkit
|
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hpctoolkit-externals
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hpgmg
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hpl
|
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hpx
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hpx5
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hsakmt
|
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hstr
|
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htop
|
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htslib
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|
|
httpie
|
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hub
|
|
|
|
hunspell
|
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hwloc
|
Rename variant static to shared (#6543)
|
2017-12-03 16:19:32 -07:00 |
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hybpiper
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hydra
|
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hypre
|
hypre: add 2.13.0 (#6726)
|
2017-12-19 15:39:27 +01:00 |
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ibmisc
|
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iceauth
|
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icedtea
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icet
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ico
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icu4c
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id3lib
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idba
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igraph
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igv
|
IGV: new package (#6710)
|
2017-12-18 19:37:09 -08:00 |
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ilmbase
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image-magick
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imake
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impute2
|
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infernal
|
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inputproto
|
|
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intel
|
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intel-daal
|
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|
|
intel-gpu-tools
|
|
|
|
intel-ipp
|
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|
intel-mkl
|
|
|
|
intel-mkl-dnn
|
Intel mkl dnn (#6268)
|
2018-01-02 21:27:34 -06:00 |
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intel-mpi
|
|
|
|
intel-parallel-studio
|
intel-parallel-studio: restrict patch to versions > 2016 (#6523)
|
2017-12-11 13:14:24 -08:00 |
|
intel-tbb
|
intel-tbb: add 2018.2 (#6725)
|
2017-12-19 15:39:42 +01:00 |
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intltool
|
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|
ior
|
|
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iozone
|
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ipopt
|
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|
isaac
|
Add Maintainer (#6575)
|
2017-12-05 14:27:56 -07:00 |
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isaac-server
|
Add Maintainer (#6575)
|
2017-12-05 14:27:56 -07:00 |
|
isl
|
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itstool
|
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itsx
|
|
|
|
jags
|
jags: lapack fix (#6764)
|
2018-01-02 19:57:54 -06:00 |
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jansson
|
Add Maintainer (#6575)
|
2017-12-05 14:27:56 -07:00 |
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jasper
|
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jdk
|
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jellyfish
|
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jemalloc
|
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jmol
|
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jq
|
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json-c
|
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json-cwx
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json-glib
|
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jsoncpp
|
|
|
|
judy
|
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julia
|
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kahip
|
|
|
|
kaks-calculator
|
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kaldi
|
Install all the cli tools from all the sub-directories (#6705)
|
2018-01-02 20:14:39 -06:00 |
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kallisto
|
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kbproto
|
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kdiff3
|
|
|
|
kealib
|
|
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kentutils
|
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kmergenie
|
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|
kokkos
|
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|
kraken
|
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krims
|
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|
kripke
|
|
|
|
kvasir-mpl
|
Add Kvasir MPL (#6529)
|
2017-12-02 16:02:43 -07:00 |
|
laghos
|
laghos: inject CXX (#6664)
|
2017-12-12 17:26:02 -07:00 |
|
lammps
|
|
|
|
last
|
|
|
|
latte
|
|
|
|
launchmon
|
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lazyten
|
|
|
|
lbann
|
Lbann update (#6751)
|
2018-01-02 20:01:23 -06:00 |
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lbxproxy
|
|
|
|
lcals
|
|
|
|
lcms
|
|
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ldc
|
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|
ldc-bootstrap
|
|
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|
legion
|
|
|
|
leveldb
|
|
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|
lftp
|
lftp: adding version 4.6.4 (#6721)
|
2017-12-19 08:19:33 +01:00 |
|
libaec
|
|
|
|
libaio
|
Fix in download url for package libaio (#6616)
|
2017-12-08 10:20:14 -07:00 |
|
libapplewm
|
|
|
|
libarchive
|
|
|
|
libassuan
|
Update gnupg to 2.2.3 (#6573)
|
2017-12-05 14:29:20 -07:00 |
|
libatomic-ops
|
|
|
|
libbeagle
|
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libbsd
|
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libbson
|
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|
libcanberra
|
|
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libcap
|
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|
libcerf
|
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libcint
|
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|
libcircle
|
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libconfig
|
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libctl
|
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|
libdivsufsort
|
|
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|
libdmx
|
|
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|
libdrm
|
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libdwarf
|
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libedit
|
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|
libelf
|
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libemos
|
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libepoxy
|
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libevent
|
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libevpath
|
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libfabric
|
|
|
|
libffi
|
|
|
|
libffs
|
|
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libfontenc
|
|
|
|
libfs
|
|
|
|
libgcrypt
|
Update gnupg to 2.2.3 (#6573)
|
2017-12-05 14:29:20 -07:00 |
|
libgd
|
|
|
|
libgit2
|
|
|
|
libgpg-error
|
|
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|
libgpuarray
|
|
|
|
libgridxc
|
atom-dft: new package plus dependencies (#6653)
|
2018-01-02 20:32:37 -06:00 |
|
libgtextutils
|
|
|
|
libharu
|
libharu: Make dependencies on zlib and libpng explicit (#6682)
|
2017-12-14 08:58:42 +01:00 |
|
libhio
|
|
|
|
libice
|
|
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libiconv
|
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libint
|
|
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libjpeg
|
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libjpeg-turbo
|
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libksba
|
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liblbxutil
|
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|
libmatheval
|
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|
libmesh
|
|
|
|
libmng
|
|
|
|
libmongoc
|
libmongoc: Fix pkg-config file not containing snappy and zlib paths (#6467)
|
2017-11-28 16:47:12 -07:00 |
|
libmonitor
|
|
|
|
libnbc
|
|
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libogg
|
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liboldx
|
|
|
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libpcap
|
|
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|
libpciaccess
|
|
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|
libpfm4
|
|
|
|
libpipeline
|
|
|
|
libpng
|
libpng: CPPFLAGS for -I (#6563)
|
2017-12-04 15:29:35 -07:00 |
|
libpsl
|
|
|
|
libpthread-stubs
|
|
|
|
libquo
|
|
|
|
libsigsegv
|
|
|
|
libsm
|
|
|
|
libsodium
|
libsodium: Update to 1.0.15 (#6643)
|
2017-12-11 17:27:09 -07:00 |
|
libspatialindex
|
|
|
|
libsplash
|
Add Maintainer (#6575)
|
2017-12-05 14:27:56 -07:00 |
|
libssh2
|
|
|
|
libsvm
|
|
|
|
libszip
|
Package 'libszip': update checksum and list_depth. (#6587)
|
2017-12-06 18:28:11 -07:00 |
|
libtermkey
|
|
|
|
libtiff
|
Add libtiff@3. (#6818)
|
2018-01-03 10:02:45 -06:00 |
|
libtool
|
|
|
|
libunistring
|
|
|
|
libunwind
|
|
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|
libuuid
|
|
|
|
libuv
|
|
|
|
libvorbis
|
|
|
|
libvterm
|
|
|
|
libwebsockets
|
Add Maintainer (#6575)
|
2017-12-05 14:27:56 -07:00 |
|
libwindowswm
|
|
|
|
libx11
|
|
|
|
libxau
|
|
|
|
libxaw
|
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libxaw3d
|
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libxc
|
|
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|
libxcb
|
|
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|
libxcomposite
|
|
|
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libxcursor
|
|
|
|
libxdamage
|
|
|
|
libxdmcp
|
|
|
|
libxevie
|
|
|
|
libxext
|
|
|
|
libxfixes
|
|
|
|
libxfont
|
|
|
|
libxfont2
|
|
|
|
libxfontcache
|
|
|
|
libxft
|
|
|
|
libxi
|
|
|
|
libxinerama
|
|
|
|
libxkbfile
|
|
|
|
libxkbui
|
|
|
|
libxml2
|
|
|
|
libxmu
|
|
|
|
libxp
|
|
|
|
libxpm
|
|
|
|
libxpresent
|
|
|
|
libxprintapputil
|
|
|
|
libxprintutil
|
|
|
|
libxrandr
|
|
|
|
libxrender
|
|
|
|
libxres
|
|
|
|
libxscrnsaver
|
|
|
|
libxshmfence
|
|
|
|
libxslt
|
|
|
|
libxsmm
|
|
|
|
libxstream
|
|
|
|
libxt
|
|
|
|
libxtrap
|
|
|
|
libxtst
|
|
|
|
libxv
|
|
|
|
libxvmc
|
|
|
|
libxxf86dga
|
|
|
|
libxxf86misc
|
|
|
|
libxxf86vm
|
|
|
|
libyogrt
|
|
|
|
libzip
|
|
|
|
likwid
|
likwid: add stable 4.3.0 (#6761)
|
2018-01-02 19:59:14 -06:00 |
|
linkphase3
|
|
|
|
linux-headers
|
|
|
|
listres
|
|
|
|
llvm
|
clang,flang: update CC, CXX environment in installation module (#6737)
|
2017-12-22 07:32:10 +01:00 |
|
llvm-lld
|
|
|
|
llvm-openmp-ompt
|
|
|
|
lmdb
|
|
|
|
lmod
|
Relax restriction on lua version. (#5886)
|
2017-12-08 20:52:00 +01:00 |
|
lndir
|
|
|
|
log4cxx
|
|
|
|
lrslib
|
|
|
|
lrzip
|
|
|
|
lua
|
|
|
|
lua-bitlib
|
|
|
|
lua-jit
|
|
|
|
lua-lpeg
|
|
|
|
lua-luafilesystem
|
|
|
|
lua-luaposix
|
|
|
|
lua-mpack
|
|
|
|
luit
|
|
|
|
lulesh
|
|
|
|
lwgrp
|
|
|
|
lwm2
|
|
|
|
lz4
|
|
|
|
lzma
|
|
|
|
lzo
|
|
|
|
m4
|
|
|
|
macsio
|
|
|
|
mad-numdiff
|
|
|
|
mafft
|
|
|
|
magics
|
|
|
|
magma
|
|
|
|
makedepend
|
|
|
|
mallocmc
|
Add Maintainer (#6575)
|
2017-12-05 14:27:56 -07:00 |
|
man-db
|
|
|
|
mariadb
|
|
|
|
masa
|
|
|
|
masurca
|
|
|
|
matio
|
|
|
|
matlab
|
|
|
|
maven
|
|
|
|
maverick
|
|
|
|
mawk
|
|
|
|
mbedtls
|
|
|
|
mcl
|
|
|
|
mdtest
|
|
|
|
meep
|
|
|
|
mefit
|
mefit: Create new package. (#6700)
|
2017-12-16 19:34:30 -07:00 |
|
memaxes
|
|
|
|
meme
|
|
|
|
meraculous
|
|
|
|
mercurial
|
fix post install method for py3 in mercurial (#6497)
|
2017-12-17 12:00:58 -06:00 |
|
mesa
|
mesa: disable binutils on macOS (#6763)
|
2018-01-02 19:58:38 -06:00 |
|
mesa-glu
|
|
|
|
meshkit
|
|
|
|
meson
|
|
|
|
mesquite
|
|
|
|
metaphysicl
|
|
|
|
metasv
|
MetaSV: adding new package (#6691)
|
2017-12-16 19:36:11 -07:00 |
|
metis
|
|
|
|
mfem
|
|
|
|
microbiomeutil
|
|
|
|
minced
|
MinCED: Create new package (#6815)
|
2018-01-02 19:25:08 -06:00 |
|
miniaero
|
|
|
|
miniamr
|
|
|
|
miniconda2
|
|
|
|
miniconda3
|
|
|
|
minife
|
|
|
|
minighost
|
|
|
|
minigmg
|
|
|
|
minimap2
|
|
|
|
minimd
|
|
|
|
minisign
|
Add new package minisign (#6644)
|
2017-12-11 17:27:40 -07:00 |
|
minismac2d
|
|
|
|
minitri
|
|
|
|
minixyce
|
|
|
|
mira
|
|
|
|
mirdeep
|
|
|
|
mitofates
|
|
|
|
mitos
|
|
|
|
mkfontdir
|
|
|
|
mkfontscale
|
|
|
|
mlhka
|
|
|
|
moab
|
|
|
|
molcas
|
|
|
|
mono
|
|
|
|
mosh
|
|
|
|
mothur
|
|
|
|
motioncor2
|
Add a new version and runtime dependency for MotionCor2. (#6817)
|
2018-01-03 10:03:35 -06:00 |
|
mozjs
|
|
|
|
mpc
|
|
|
|
mpe2
|
|
|
|
mpest
|
|
|
|
mpfr
|
|
|
|
mpibash
|
|
|
|
mpiblast
|
|
|
|
mpich
|
|
|
|
mpifileutils
|
|
|
|
mpileaks
|
|
|
|
mpip
|
|
|
|
mpir
|
|
|
|
mpix-launch-swift
|
|
|
|
mrbayes
|
mrbayes: url now points to github + removed the deprecated sourceforge url (#6578)
|
2017-12-06 07:58:08 +01:00 |
|
mrnet
|
|
|
|
mrtrix3
|
|
|
|
msgpack-c
|
|
|
|
mshadow
|
|
|
|
multitail
|
|
|
|
multiverso
|
|
|
|
mummer
|
|
|
|
mumps
|
|
|
|
munge
|
|
|
|
muparser
|
|
|
|
muscle
|
|
|
|
muse
|
|
|
|
muster
|
|
|
|
mvapich2
|
|
|
|
mxml
|
|
|
|
mxnet
|
|
|
|
nag
|
|
|
|
nalu
|
Adding option to build Nalu with Hypre support. (#6782)
|
2018-01-02 19:42:47 -06:00 |
|
namd
|
|
|
|
nano
|
|
|
|
nanoflann
|
|
|
|
nasm
|
|
|
|
nauty
|
|
|
|
ncbi-rmblastn
|
|
|
|
nccl
|
|
|
|
nccmp
|
|
|
|
ncdu
|
|
|
|
ncftp
|
|
|
|
ncl
|
|
|
|
nco
|
|
|
|
ncurses
|
Emacs: added gnutls variant (tested on Centos 7) (#6711)
|
2017-12-19 08:36:54 +01:00 |
|
ncview
|
|
|
|
ndiff
|
|
|
|
nekbone
|
Update the Nekbone package (#6508)
|
2017-12-08 10:29:58 -07:00 |
|
nekcem
|
Add NekCEM package to spack (#6509)
|
2017-12-08 10:30:42 -07:00 |
|
neovim
|
Fix reference to self.versions in neovim package (#6639)
|
2017-12-10 21:43:49 +01:00 |
|
netcdf
|
|
|
|
netcdf-cxx
|
dealii: add scalapack and various cleanups (#6552)
|
2017-12-04 08:02:05 +01:00 |
|
netcdf-cxx4
|
dealii: add scalapack and various cleanups (#6552)
|
2017-12-04 08:02:05 +01:00 |
|
netcdf-fortran
|
|
|
|
netgauge
|
|
|
|
netgen
|
|
|
|
netlib-lapack
|
build lapacke with tmg (#6654)
|
2017-12-16 19:43:46 -07:00 |
|
netlib-scalapack
|
|
|
|
nettle
|
|
|
|
nextflow
|
nextflow: adding version 0.21.0 (#6722)
|
2017-12-19 09:07:33 +01:00 |
|
nfft
|
|
|
|
nghttp2
|
|
|
|
nginx
|
Updated 'nginx' from v1.12.0 to v1.13.8. (#6810)
|
2018-01-02 19:29:47 -06:00 |
|
ngmlr
|
|
|
|
ninja
|
|
|
|
ninja-fortran
|
|
|
|
nlopt
|
Add new package nlopt (#6499)
|
2017-11-29 10:27:08 +01:00 |
|
nmap
|
|
|
|
nnvm
|
|
|
|
node-js
|
|
|
|
notmuch
|
|
|
|
npb
|
|
|
|
npm
|
|
|
|
npth
|
Update gnupg to 2.2.3 (#6573)
|
2017-12-05 14:29:20 -07:00 |
|
nspr
|
|
|
|
numactl
|
|
|
|
numdiff
|
|
|
|
nut
|
|
|
|
nwchem
|
|
|
|
ocaml
|
|
|
|
oce
|
|
|
|
oclock
|
|
|
|
octave
|
|
|
|
octave-optim
|
add OctavePackage (#6746)
|
2018-01-02 20:03:27 -06:00 |
|
octave-splines
|
add OctavePackage (#6746)
|
2018-01-02 20:03:27 -06:00 |
|
octave-struct
|
add OctavePackage (#6746)
|
2018-01-02 20:03:27 -06:00 |
|
octopus
|
|
|
|
of-adios-write
|
|
|
|
ompss
|
|
|
|
ompt-openmp
|
|
|
|
oniguruma
|
|
|
|
ont-albacore
|
|
|
|
opari2
|
|
|
|
openbabel
|
|
|
|
openblas
|
|
|
|
opencoarrays
|
|
|
|
opencv
|
|
|
|
openexr
|
|
|
|
openfast
|
Update openfast package to explicity pass MPI implementation during cmake configure. (#6590)
|
2017-12-08 09:09:35 +01:00 |
|
openfoam-com
|
ENH: better handling of mpich for openfoam packages
|
2017-12-20 11:32:33 -08:00 |
|
openfoam-org
|
ENH: improved openfoam module creation (issue #4942)
|
2017-12-20 11:32:33 -08:00 |
|
openfst
|
|
|
|
openjpeg
|
Package 'openjpeg': set INSTALL_NAME_DIR on MacOS for old versions. (#6603)
|
2017-12-08 13:36:20 +01:00 |
|
openmc
|
|
|
|
openmpi
|
|
|
|
opennurbs
|
Add opennurbs package (#6570)
|
2017-12-05 10:33:55 -07:00 |
|
openscenegraph
|
|
|
|
openspeedshop
|
|
|
|
openssh
|
Update openSSH to 7.6p1 (#6598)
|
2017-12-08 10:13:41 -07:00 |
|
openssl
|
openssl: Update to 1.0.2n (#6641)
|
2017-12-11 17:26:37 -07:00 |
|
opium
|
|
|
|
opus
|
|
|
|
orfm
|
|
|
|
orthomcl
|
|
|
|
osu-micro-benchmarks
|
|
|
|
otf
|
|
|
|
otf2
|
|
|
|
p4est
|
|
|
|
p7zip
|
|
|
|
pacbio-daligner
|
|
|
|
pacbio-damasker
|
|
|
|
pacbio-dazz-db
|
|
|
|
pacbio-dextractor
|
|
|
|
pagit
|
|
|
|
pagmo
|
|
|
|
paml
|
|
|
|
panda
|
|
|
|
pandaseq
|
PANDAseq: Create new package (#6694)
|
2017-12-16 19:35:48 -07:00 |
|
pango
|
|
|
|
papi
|
|
|
|
paradiseo
|
|
|
|
parallel
|
|
|
|
parallel-netcdf
|
|
|
|
paraver
|
|
|
|
paraview
|
paraview package: Explicitly specify MPI compilers in Cmake (#6738)
|
2018-01-02 13:06:25 -08:00 |
|
parmetis
|
|
|
|
parmgridgen
|
|
|
|
parsimonator
|
|
|
|
parsplice
|
|
|
|
partitionfinder
|
|
|
|
patch
|
|
|
|
patchelf
|
|
|
|
pathfinder
|
|
|
|
pax-utils
|
|
|
|
pbmpi
|
|
|
|
pcma
|
|
|
|
pcre
|
|
|
|
pcre2
|
|
|
|
pdsh
|
|
|
|
pdt
|
|
|
|
pegtl
|
|
|
|
pennant
|
|
|
|
percept
|
new package: Percept (#6636)
|
2017-12-14 18:11:47 -08:00 |
|
perl
|
|
|
|
perl-algorithm-diff
|
|
|
|
perl-b-hooks-endofscope
|
|
|
|
perl-bio-perl
|
|
|
|
perl-bit-vector
|
new packages: biopieces and dependencies (#6478)
|
2017-12-12 18:35:13 -08:00 |
|
perl-capture-tiny
|
|
|
|
perl-carp-clan
|
new packages: biopieces and dependencies (#6478)
|
2017-12-12 18:35:13 -08:00 |
|
perl-class-data-inheritable
|
|
|
|
perl-class-inspector
|
new packages: biopieces and dependencies (#6478)
|
2017-12-12 18:35:13 -08:00 |
|
perl-class-load
|
|
|
|
perl-class-load-xs
|
|
|
|
perl-cpan-meta-check
|
|
|
|
perl-data-optlist
|
|
|
|
perl-data-stag
|
|
|
|
perl-dbd-mysql
|
new packages: biopieces and dependencies (#6478)
|
2017-12-12 18:35:13 -08:00 |
|
perl-dbfile
|
|
|
|
perl-dbi
|
|
|
|
perl-devel-cycle
|
|
|
|
perl-devel-globaldestruction
|
|
|
|
perl-devel-overloadinfo
|
|
|
|
perl-devel-stacktrace
|
|
|
|
perl-dist-checkconflicts
|
|
|
|
perl-encode-locale
|
new packages: biopieces and dependencies (#6478)
|
2017-12-12 18:35:13 -08:00 |
|
perl-eval-closure
|
|
|
|
perl-exception-class
|
|
|
|
perl-extutils-makemaker
|
|
|
|
perl-extutils-pkgconfig
|
|
|
|
perl-file-copy-recursive
|
new packages: biopieces and dependencies (#6478)
|
2017-12-12 18:35:13 -08:00 |
|
perl-file-listing
|
new packages: biopieces and dependencies (#6478)
|
2017-12-12 18:35:13 -08:00 |
|
perl-file-pushd
|
|
|
|
perl-file-sharedir-install
|
new packages: biopieces and dependencies (#6478)
|
2017-12-12 18:35:13 -08:00 |
|
perl-file-slurp-tiny
|
new packages: biopieces and dependencies (#6478)
|
2017-12-12 18:35:13 -08:00 |
|
perl-file-which
|
create perl-file-which package (#6800)
|
2018-01-02 19:36:59 -06:00 |
|
perl-font-ttf
|
|
|
|
perl-gd
|
|
|
|
perl-gd-graph
|
|
|
|
perl-gd-text
|
|
|
|
perl-html-parser
|
new packages: biopieces and dependencies (#6478)
|
2017-12-12 18:35:13 -08:00 |
|
perl-html-tagset
|
new packages: biopieces and dependencies (#6478)
|
2017-12-12 18:35:13 -08:00 |
|
perl-http-cookies
|
new packages: biopieces and dependencies (#6478)
|
2017-12-12 18:35:13 -08:00 |
|
perl-http-daemon
|
new packages: biopieces and dependencies (#6478)
|
2017-12-12 18:35:13 -08:00 |
|
perl-http-date
|
new packages: biopieces and dependencies (#6478)
|
2017-12-12 18:35:13 -08:00 |
|
perl-http-message
|
new packages: biopieces and dependencies (#6478)
|
2017-12-12 18:35:13 -08:00 |
|
perl-http-negotiate
|
new packages: biopieces and dependencies (#6478)
|
2017-12-12 18:35:13 -08:00 |
|
perl-inline
|
new packages: biopieces and dependencies (#6478)
|
2017-12-12 18:35:13 -08:00 |
|
perl-inline-c
|
new packages: biopieces and dependencies (#6478)
|
2017-12-12 18:35:13 -08:00 |
|
perl-intervaltree
|
|
|
|
perl-io-html
|
new packages: biopieces and dependencies (#6478)
|
2017-12-12 18:35:13 -08:00 |
|
perl-io-sessiondata
|
new packages: biopieces and dependencies (#6478)
|
2017-12-12 18:35:13 -08:00 |
|
perl-io-socket-ssl
|
new packages: biopieces and dependencies (#6478)
|
2017-12-12 18:35:13 -08:00 |
|
perl-io-string
|
|
|
|
perl-log-log4perl
|
|
|
|
perl-lwp
|
new packages: biopieces and dependencies (#6478)
|
2017-12-12 18:35:13 -08:00 |
|
perl-lwp-mediatypes
|
new packages: biopieces and dependencies (#6478)
|
2017-12-12 18:35:13 -08:00 |
|
perl-lwp-protocol-https
|
new packages: biopieces and dependencies (#6478)
|
2017-12-12 18:35:13 -08:00 |
|
perl-math-cdf
|
|
|
|
perl-module-build
|
|
|
|
perl-module-runtime-conflicts
|
|
|
|
perl-moose
|
|
|
|
perl-mozilla-ca
|
new packages: biopieces and dependencies (#6478)
|
2017-12-12 18:35:13 -08:00 |
|
perl-mro-compat
|
|
|
|
perl-namespace-clean
|
|
|
|
perl-net-http
|
new packages: biopieces and dependencies (#6478)
|
2017-12-12 18:35:13 -08:00 |
|
perl-net-ssleay
|
new packages: biopieces and dependencies (#6478)
|
2017-12-12 18:35:13 -08:00 |
|
perl-package-deprecationmanager
|
|
|
|
perl-package-stash
|
|
|
|
perl-package-stash-xs
|
|
|
|
perl-padwalker
|
|
|
|
perl-params-util
|
|
|
|
perl-parse-recdescent
|
new packages: biopieces and dependencies (#6478)
|
2017-12-12 18:35:13 -08:00 |
|
perl-pdf-api2
|
|
|
|
perl-pegex
|
new packages: biopieces and dependencies (#6478)
|
2017-12-12 18:35:13 -08:00 |
|
perl-soap-lite
|
new packages: biopieces and dependencies (#6478)
|
2017-12-12 18:35:13 -08:00 |
|
perl-star-fusion
|
|
|
|
perl-statistics-descriptive
|
Perl-statistics-descriptive: Create new package (#6588)
|
2017-12-08 10:22:16 -07:00 |
|
perl-sub-exporter
|
|
|
|
perl-sub-exporter-progressive
|
|
|
|
perl-sub-identify
|
|
|
|
perl-sub-install
|
|
|
|
perl-sub-name
|
|
|
|
perl-sub-uplevel
|
|
|
|
perl-svg
|
new packages: biopieces and dependencies (#6478)
|
2017-12-12 18:35:13 -08:00 |
|
perl-task-weaken
|
new packages: biopieces and dependencies (#6478)
|
2017-12-12 18:35:13 -08:00 |
|
perl-term-readkey
|
|
|
|
perl-test-cleannamespaces
|
|
|
|
perl-test-deep
|
|
|
|
perl-test-differences
|
|
|
|
perl-test-exception
|
|
|
|
perl-test-fatal
|
|
|
|
perl-test-memory-cycle
|
|
|
|
perl-test-most
|
|
|
|
perl-test-needs
|
|
|
|
perl-test-requires
|
|
|
|
perl-test-requiresinternet
|
new packages: biopieces and dependencies (#6478)
|
2017-12-12 18:35:13 -08:00 |
|
perl-test-warn
|
|
|
|
perl-test-warnings
|
|
|
|
perl-text-diff
|
|
|
|
perl-time-hires
|
new packages: biopieces and dependencies (#6478)
|
2017-12-12 18:35:13 -08:00 |
|
perl-try-tiny
|
new packages: biopieces and dependencies (#6478)
|
2017-12-12 18:35:13 -08:00 |
|
perl-uri
|
new packages: biopieces and dependencies (#6478)
|
2017-12-12 18:35:13 -08:00 |
|
perl-uri-escape
|
|
|
|
perl-version
|
new packages: biopieces and dependencies (#6478)
|
2017-12-12 18:35:13 -08:00 |
|
perl-www-robotrules
|
new packages: biopieces and dependencies (#6478)
|
2017-12-12 18:35:13 -08:00 |
|
perl-xml-libxml
|
perl-xml-libxml: adding perl module (#6783)
|
2018-01-02 19:42:09 -06:00 |
|
perl-xml-parser
|
|
|
|
perl-xml-parser-lite
|
new packages: biopieces and dependencies (#6478)
|
2017-12-12 18:35:13 -08:00 |
|
perl-yaml-libyaml
|
new packages: biopieces and dependencies (#6478)
|
2017-12-12 18:35:13 -08:00 |
|
petsc
|
Add petsc version 3.8.3 (#6688)
|
2017-12-16 19:37:35 -07:00 |
|
pexsi
|
|
|
|
pfft
|
|
|
|
pflotran
|
Xsdk 0.3.0 (#6277)
|
2017-11-27 22:08:08 -08:00 |
|
pfunit
|
new package: Pfunit: unit testing framework for Fortran (#6795)
|
2018-01-02 12:18:08 -08:00 |
|
pgdspider
|
|
|
|
pgi
|
|
|
|
phantompeakqualtools
|
|
|
|
phasta
|
|
|
|
phylip
|
|
|
|
picard
|
picard: Add version 2.17.0 (#6729)
|
2017-12-20 13:28:37 +01:00 |
|
pidx
|
|
|
|
pigz
|
|
|
|
piranha
|
|
|
|
pixman
|
|
|
|
pkg-config
|
|
|
|
pkgconf
|
|
|
|
planck-likelihood
|
|
|
|
plasma
|
|
|
|
plink
|
|
|
|
plumed
|
|
|
|
pmgr-collective
|
|
|
|
pmix
|
|
|
|
pnfft
|
|
|
|
pngwriter
|
Add Maintainer (#6575)
|
2017-12-05 14:27:56 -07:00 |
|
poamsa
|
|
|
|
pocl
|
|
|
|
polymake
|
|
|
|
porta
|
|
|
|
portage
|
|
|
|
postgresql
|
|
|
|
ppl
|
|
|
|
prank
|
|
|
|
presentproto
|
|
|
|
preseq
|
|
|
|
price
|
|
|
|
primer3
|
|
|
|
printproto
|
|
|
|
probconsrna
|
|
|
|
proj
|
|
|
|
protobuf
|
|
|
|
proxymngr
|
|
|
|
pruners-ninja
|
|
|
|
ps-lite
|
|
|
|
psi4
|
|
|
|
pstreams
|
|
|
|
pugixml
|
|
|
|
pumi
|
|
|
|
pvm
|
|
|
|
py-3to2
|
|
|
|
py-4suite-xml
|
|
|
|
py-abipy
|
|
|
|
py-adios
|
New Package: py-adios (#5686)
|
2018-01-02 21:37:59 -06:00 |
|
py-alabaster
|
|
|
|
py-apache-libcloud
|
|
|
|
py-apipkg
|
|
|
|
py-appdirs
|
|
|
|
py-appnope
|
|
|
|
py-apscheduler
|
|
|
|
py-argcomplete
|
|
|
|
py-argparse
|
|
|
|
py-ase
|
|
|
|
py-asn1crypto
|
|
|
|
py-astroid
|
Fix astroid dependency and mark broken version (#6493)
|
2017-11-28 16:43:43 -07:00 |
|
py-astropy
|
Fix AstroPy: Missing Markupsafe (#6630)
|
2017-12-08 10:21:46 -07:00 |
|
py-attrs
|
|
|
|
py-autopep8
|
|
|
|
py-babel
|
|
|
|
py-backports-abc
|
|
|
|
py-backports-functools-lru-cache
|
add package: py-backports-functools-lru-cache (#6488)
|
2017-11-28 13:54:40 -08:00 |
|
py-backports-shutil-get-terminal-size
|
|
|
|
py-backports-ssl-match-hostname
|
|
|
|
py-basemap
|
|
|
|
py-beautifulsoup4
|
|
|
|
py-binwalk
|
|
|
|
py-biom-format
|
|
|
|
py-biopython
|
package py-biopython: remove py-mx dependency (#6772)
|
2018-01-02 10:59:21 -08:00 |
|
py-bleach
|
|
|
|
py-blessings
|
|
|
|
py-bokeh
|
|
|
|
py-boltons
|
|
|
|
py-bottleneck
|
|
|
|
py-brian
|
|
|
|
py-brian2
|
|
|
|
py-bsddb3
|
|
|
|
py-bx-python
|
py-bx-python: Create new package (#6672)
|
2017-12-16 19:38:59 -07:00 |
|
py-cclib
|
|
|
|
py-cdat-lite
|
|
|
|
py-cdo
|
|
|
|
py-certifi
|
|
|
|
py-cffi
|
|
|
|
py-chardet
|
|
|
|
py-click
|
|
|
|
py-cogent
|
py-cogent: Create new package (#6624)
|
2017-12-08 10:38:37 +01:00 |
|
py-colorama
|
|
|
|
py-colormath
|
|
|
|
py-configparser
|
|
|
|
py-counter
|
|
|
|
py-coverage
|
|
|
|
py-cpuinfo
|
|
|
|
py-cryptography
|
|
|
|
py-csvkit
|
|
|
|
py-current
|
|
|
|
py-cutadapt
|
|
|
|
py-cycler
|
|
|
|
py-cython
|
|
|
|
py-dask
|
|
|
|
py-dateutil
|
|
|
|
py-dbf
|
|
|
|
py-decorator
|
|
|
|
py-deeptools
|
|
|
|
py-dendropy
|
py-dendropy: Create new package (#6528)
|
2017-12-01 11:00:45 -07:00 |
|
py-dev
|
|
|
|
py-dill
|
|
|
|
py-dlcpar
|
|
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|
py-docutils
|
|
|
|
py-doxypy
|
|
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|
py-doxypypy
|
|
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|
py-dryscrape
|
|
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|
py-dxchange
|
|
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|
py-dxfile
|
|
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|
py-easybuild-easyblocks
|
|
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|
py-easybuild-easyconfigs
|
|
|
|
py-easybuild-framework
|
|
|
|
py-edffile
|
|
|
|
py-editdistance
|
add package py-editdistance (#6492)
|
2017-11-28 16:43:00 -07:00 |
|
py-elasticsearch
|
|
|
|
py-elephant
|
|
|
|
py-emcee
|
|
|
|
py-entrypoints
|
|
|
|
py-enum34
|
add conflicts to py-enum34 (#6496)
|
2017-11-28 16:45:08 -07:00 |
|
py-epydoc
|
|
|
|
py-espresso
|
|
|
|
py-espressopp
|
|
|
|
py-et-xmlfile
|
|
|
|
py-execnet
|
|
|
|
py-fastaindex
|
|
|
|
py-fasteners
|
|
|
|
py-faststructure
|
|
|
|
py-fiscalyear
|
|
|
|
py-flake8
|
add restriction to py-setuptools dependency on py-flake8 (#6589)
|
2017-12-08 10:22:52 -07:00 |
|
py-flask
|
|
|
|
py-flexx
|
|
|
|
py-funcsigs
|
|
|
|
py-functools32
|
|
|
|
py-future
|
|
|
|
py-futures
|
|
|
|
py-genders
|
|
|
|
py-genshi
|
|
|
|
py-git2
|
|
|
|
py-git-review
|
|
|
|
py-gnuplot
|
|
|
|
py-griddataformats
|
|
|
|
py-guidata
|
|
|
|
py-guiqwt
|
|
|
|
py-h5py
|
Py h5py update (#6635)
|
2017-12-11 17:26:13 -07:00 |
|
py-html2text
|
|
|
|
py-html5lib
|
|
|
|
py-htseq
|
py-htseq: Create new package. (#6623)
|
2017-12-08 10:36:57 +01:00 |
|
py-httpbin
|
|
|
|
py-hypothesis
|
|
|
|
py-idna
|
|
|
|
py-igraph
|
|
|
|
py-imagesize
|
|
|
|
py-iminuit
|
|
|
|
py-importlib
|
|
|
|
py-ipaddress
|
|
|
|
py-ipdb
|
|
|
|
py-ipykernel
|
|
|
|
py-ipython
|
|
|
|
py-ipython-genutils
|
|
|
|
py-ipywidgets
|
|
|
|
py-isort
|
add package py-isort (#6491)
|
2017-11-28 16:42:47 -07:00 |
|
py-itsdangerous
|
|
|
|
py-jdcal
|
|
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|
py-jedi
|
|
|
|
py-jinja2
|
|
|
|
py-joblib
|
|
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|
py-jpype
|
|
|
|
py-jsonschema
|
|
|
|
py-junit-xml
|
|
|
|
py-jupyter-client
|
|
|
|
py-jupyter-console
|
|
|
|
py-jupyter-core
|
|
|
|
py-jupyter-notebook
|
|
|
|
py-keras
|
|
|
|
py-latexcodec
|
|
|
|
py-lazy
|
|
|
|
py-lazy-object-proxy
|
add package py-lazy-object-proxy (#6489)
|
2017-11-30 09:17:28 +01:00 |
|
py-lazyarray
|
|
|
|
py-libconf
|
|
|
|
py-libensemble
|
Add new package py-libensemble (#6525)
|
2017-12-01 11:01:08 -07:00 |
|
py-line-profiler
|
|
|
|
py-linecache2
|
|
|
|
py-lit
|
|
|
|
py-llvmlite
|
|
|
|
py-lmfit
|
|
|
|
py-lockfile
|
|
|
|
py-logilab-common
|
|
|
|
py-lrudict
|
py-lrudict: a LRU-based cache dictionary (#6734)
|
2018-01-02 20:10:49 -06:00 |
|
py-lxml
|
|
|
|
py-lzstring
|
|
|
|
py-macholib
|
|
|
|
py-machotools
|
|
|
|
py-macs2
|
|
|
|
py-mako
|
|
|
|
py-mappy
|
|
|
|
py-markdown
|
|
|
|
py-markupsafe
|
|
|
|
py-matplotlib
|
|
|
|
py-mccabe
|
|
|
|
py-mdanalysis
|
|
|
|
py-meep
|
|
|
|
py-memory-profiler
|
|
|
|
py-methylcode
|
|
|
|
py-misopy
|
|
|
|
py-mistune
|
|
|
|
py-mock
|
|
|
|
py-moltemplate
|
moltemplate: add new package (#6702)
|
2017-12-16 19:33:28 -07:00 |
|
py-mongo
|
|
|
|
py-monotonic
|
|
|
|
py-monty
|
|
|
|
py-mpi4py
|
Cython only needed for develop version of mpi4py (#6780)
|
2018-01-02 11:34:24 -08:00 |
|
py-mpmath
|
|
|
|
py-multiprocess
|
|
|
|
py-multiqc
|
py-multiqc: Add version 1.3 (#6554)
|
2017-12-03 16:21:27 -07:00 |
|
py-mx
|
|
|
|
py-mxnet
|
|
|
|
py-myhdl
|
|
|
|
py-mysqldb1
|
|
|
|
py-nbconvert
|
|
|
|
py-nbformat
|
|
|
|
py-neo
|
|
|
|
py-nestle
|
|
|
|
py-netcdf4
|
|
|
|
py-netifaces
|
|
|
|
py-networkx
|
|
|
|
py-nose
|
|
|
|
py-nosexcover
|
|
|
|
py-numba
|
|
|
|
py-numexpr
|
|
|
|
py-numpy
|
py-numpy: add 1.13.3 (#6484)
|
2017-11-28 13:42:59 +01:00 |
|
py-numpydoc
|
|
|
|
py-olefile
|
|
|
|
py-ont-fast5-api
|
|
|
|
py-openpyxl
|
|
|
|
py-ordereddict
|
|
|
|
py-oset
|
|
|
|
py-packaging
|
|
|
|
py-palettable
|
|
|
|
py-pandas
|
py-pandas: add versions 0.19.2 and 0.21.1 (#6687)
|
2017-12-16 19:38:02 -07:00 |
|
py-paramiko
|
|
|
|
py-pathlib2
|
|
|
|
py-pathos
|
|
|
|
py-pathspec
|
|
|
|
py-patsy
|
|
|
|
py-pbr
|
|
|
|
py-periodictable
|
|
|
|
py-petsc4py
|
|
|
|
py-pexpect
|
|
|
|
py-phonopy
|
|
|
|
py-pickleshare
|
|
|
|
py-pil
|
|
|
|
py-pillow
|
|
|
|
py-pip
|
|
|
|
py-pipits
|
|
|
|
py-pkgconfig
|
|
|
|
py-plotly
|
Add: Py-Plotly (#6628)
|
2017-12-08 10:21:28 -07:00 |
|
py-ply
|
|
|
|
py-pmw
|
|
|
|
py-pox
|
|
|
|
py-ppft
|
|
|
|
py-prettytable
|
|
|
|
py-proj
|
|
|
|
py-prompt-toolkit
|
|
|
|
py-protobuf
|
|
|
|
py-psutil
|
|
|
|
py-ptyprocess
|
|
|
|
py-pudb
|
|
|
|
py-py
|
|
|
|
py-py2bit
|
|
|
|
py-py2cairo
|
|
|
|
py-py2neo
|
|
|
|
py-py4j
|
|
|
|
py-pyani
|
py-pyani: Create new package (#6811)
|
2018-01-02 19:27:42 -06:00 |
|
py-pyasn1
|
|
|
|
py-pybigwig
|
|
|
|
py-pybind11
|
|
|
|
py-pybtex
|
|
|
|
py-pybtex-docutils
|
|
|
|
py-pychecker
|
|
|
|
py-pycodestyle
|
|
|
|
py-pycparser
|
|
|
|
py-pycrypto
|
|
|
|
py-pycurl
|
|
|
|
py-pydatalog
|
|
|
|
py-pydispatcher
|
|
|
|
py-pydot
|
|
|
|
py-pyelftools
|
|
|
|
py-pyfasta
|
|
|
|
py-pyfftw
|
|
|
|
py-pyflakes
|
|
|
|
py-pygments
|
|
|
|
py-pygobject
|
|
|
|
py-pygtk
|
|
|
|
py-pylint
|
remove breaking version and cleanup of dependencies (#6494)
|
2017-11-28 16:46:23 -07:00 |
|
py-pymatgen
|
|
|
|
py-pyminifier
|
|
|
|
py-pympler
|
|
|
|
py-pynn
|
|
|
|
py-pypar
|
|
|
|
py-pyparsing
|
|
|
|
py-pypeflow
|
|
|
|
py-pyprof2html
|
|
|
|
py-pyqt
|
|
|
|
py-pyrad
|
|
|
|
py-pysam
|
py-pysam: adding old version 0.7.7 (#6675)
|
2017-12-13 09:01:45 +01:00 |
|
py-pyscaf
|
|
|
|
py-pyserial
|
|
|
|
py-pyside
|
|
|
|
py-pysocks
|
|
|
|
py-pytables
|
|
|
|
py-pytest
|
|
|
|
py-pytest-cov
|
|
|
|
py-pytest-flake8
|
|
|
|
py-pytest-httpbin
|
|
|
|
py-pytest-mock
|
|
|
|
py-pytest-runner
|
add missing build dependency to py-pytest-runner (#6490)
|
2017-11-28 16:52:18 -07:00 |
|
py-pytest-xdist
|
|
|
|
py-python-daemon
|
|
|
|
py-python-gitlab
|
|
|
|
py-pythonqwt
|
|
|
|
py-pytz
|
Add: Py-Plotly (#6628)
|
2017-12-08 10:21:28 -07:00 |
|
py-pywavelets
|
|
|
|
py-pyyaml
|
|
|
|
py-qtawesome
|
|
|
|
py-qtconsole
|
|
|
|
py-qtpy
|
|
|
|
py-quantities
|
|
|
|
py-radical-utils
|
|
|
|
py-ranger
|
|
|
|
py-readme-renderer
|
|
|
|
py-regex
|
|
|
|
py-reportlab
|
py-reportlab: Create new package (#6612)
|
2017-12-08 10:22:46 +01:00 |
|
py-requests
|
Add: Py-Plotly (#6628)
|
2017-12-08 10:21:28 -07:00 |
|
py-restview
|
|
|
|
py-rope
|
|
|
|
py-rpy2
|
|
|
|
py-rsa
|
|
|
|
py-rseqc
|
new package: py-rseqc (#6773)
|
2018-01-02 11:10:55 -08:00 |
|
py-rtree
|
|
|
|
py-saga-python
|
|
|
|
py-scandir
|
py-scandir: a better directory iterator, backport to 2.7 (#6739)
|
2018-01-02 20:08:58 -06:00 |
|
py-scientificpython
|
|
|
|
py-scikit-image
|
|
|
|
py-scikit-learn
|
|
|
|
py-scipy
|
pi-scipy: add 1.0.0 (#6486)
|
2017-11-28 13:42:27 +01:00 |
|
py-seaborn
|
|
|
|
py-setuptools
|
|
|
|
py-setuptools-scm
|
|
|
|
py-sfepy
|
|
|
|
py-sh
|
|
|
|
py-shiboken
|
|
|
|
py-simplegeneric
|
|
|
|
py-simplejson
|
|
|
|
py-singledispatch
|
|
|
|
py-sip
|
|
|
|
py-six
|
Add: Py-Plotly (#6628)
|
2017-12-08 10:21:28 -07:00 |
|
py-slepc4py
|
|
|
|
py-sncosmo
|
|
|
|
py-snowballstemmer
|
|
|
|
py-spectra
|
|
|
|
py-spefile
|
|
|
|
py-spglib
|
|
|
|
py-sphinx
|
|
|
|
py-sphinx-bootstrap-theme
|
|
|
|
py-sphinx-rtd-theme
|
|
|
|
py-sphinxcontrib-bibtex
|
|
|
|
py-sphinxcontrib-programoutput
|
|
|
|
py-sphinxcontrib-websupport
|
|
|
|
py-spyder
|
|
|
|
py-spykeutils
|
|
|
|
py-sqlalchemy
|
|
|
|
py-statsmodels
|
|
|
|
py-storm
|
|
|
|
py-subprocess32
|
|
|
|
py-symengine
|
|
|
|
py-symfit
|
|
|
|
py-sympy
|
|
|
|
py-tabulate
|
|
|
|
py-tappy
|
|
|
|
py-terminado
|
|
|
|
py-tetoolkit
|
py-tetoolkit: Create new package (#6673)
|
2017-12-16 19:38:36 -07:00 |
|
py-theano
|
|
|
|
py-tifffile
|
|
|
|
py-toml
|
Flit package (#6260)
|
2017-11-30 09:05:40 +01:00 |
|
py-tomopy
|
|
|
|
py-tornado
|
|
|
|
py-tqdm
|
|
|
|
py-traceback2
|
|
|
|
py-traitlets
|
|
|
|
py-tuiview
|
|
|
|
py-twisted
|
|
|
|
py-typing
|
|
|
|
py-tzlocal
|
|
|
|
py-unittest2
|
|
|
|
py-unittest2py3k
|
|
|
|
py-urllib3
|
|
|
|
py-urwid
|
|
|
|
py-vcversioner
|
|
|
|
py-virtualenv
|
|
|
|
py-vsc-base
|
|
|
|
py-vsc-install
|
|
|
|
py-wcsaxes
|
|
|
|
py-wcwidth
|
|
|
|
py-webkit-server
|
|
|
|
py-werkzeug
|
|
|
|
py-wheel
|
|
|
|
py-widgetsnbextension
|
|
|
|
py-wrapt
|
|
|
|
py-xarray
|
|
|
|
py-xattr
|
py-xattr: a python interface to access extended file attribute (#6747)
|
2018-01-02 20:02:03 -06:00 |
|
py-xlrd
|
|
|
|
py-xlsxwriter
|
|
|
|
py-xmlrunner
|
|
|
|
py-xopen
|
|
|
|
py-xpyb
|
|
|
|
py-xvfbwrapper
|
|
|
|
py-yapf
|
|
|
|
py-yt
|
|
|
|
py-zmq
|
|
|
|
python
|
|
|
|
qbank
|
|
|
|
qbox
|
|
|
|
qhull
|
|
|
|
qmcpack
|
QMCPACK package: update blas/lapack detection (#6753)
|
2017-12-22 16:47:49 -08:00 |
|
qmd-progress
|
|
|
|
qrupdate
|
qrupdate: fix blas/lapack and compilation of macOS (#6614)
|
2017-12-08 10:24:44 +01:00 |
|
qt
|
|
|
|
qt-creator
|
|
|
|
qtgraph
|
|
|
|
qthreads
|
|
|
|
quinoa
|
|
|
|
qwt
|
|
|
|
r
|
Added package r version 3.4.3 (#6565)
|
2017-12-04 17:39:34 -07:00 |
|
r-a4
|
|
|
|
r-a4base
|
|
|
|
r-a4classif
|
|
|
|
r-a4core
|
|
|
|
r-a4preproc
|
|
|
|
r-a4reporting
|
|
|
|
r-abadata
|
|
|
|
r-abaenrichment
|
|
|
|
r-abind
|
|
|
|
r-absseq
|
|
|
|
r-acde
|
|
|
|
r-acepack
|
|
|
|
r-acgh
|
|
|
|
r-acme
|
|
|
|
r-ada
|
|
|
|
r-adabag
|
|
|
|
r-ade4
|
|
|
|
r-adegenet
|
|
|
|
r-adsplit
|
|
|
|
r-affxparser
|
|
|
|
r-affy
|
|
|
|
r-affycomp
|
|
|
|
r-affycompatible
|
|
|
|
r-affycontam
|
|
|
|
r-affycoretools
|
|
|
|
r-affydata
|
|
|
|
r-affyexpress
|
|
|
|
r-affyilm
|
|
|
|
r-affyio
|
|
|
|
r-affypdnn
|
|
|
|
r-affyplm
|
|
|
|
r-affyqcreport
|
|
|
|
r-affyrnadegradation
|
|
|
|
r-agdex
|
|
|
|
r-agilp
|
|
|
|
r-agimicrorna
|
|
|
|
r-aims
|
|
|
|
r-aldex2
|
|
|
|
r-allelicimbalance
|
|
|
|
r-alpine
|
|
|
|
r-als
|
|
|
|
r-alsace
|
|
|
|
r-altcdfenvs
|
|
|
|
r-ampliqueso
|
|
|
|
r-analysispageserver
|
|
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r-anaquin
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r-aneufinder
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r-aneufinderdata
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r-annaffy
|
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r-annotate
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r-annotationdbi
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r-annotationfilter
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r-annotationforge
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r-annotationhub
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r-ape
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r-assertthat
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r-backports
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r-bamsignals
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r-base64
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r-base64enc
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r-beanplot
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r-bh
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r-bindr
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r-bindrcpp
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r-biobase
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r-biocgenerics
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r-biocinstaller
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r-biocparallel
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r-biomart
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r-biomformat
|
r-biomformat: Create new package. (#6517)
|
2017-11-30 09:14:12 +01:00 |
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r-biostrings
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r-biovizbase
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r-bit
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r-bit64
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r-bitops
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r-blob
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r-boot
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r-brew
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r-broom
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r-bsgenome
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r-bumphunter
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r-c50
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r-callr
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r-car
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r-caret
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r-category
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r-catools
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r-cellranger
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r-checkmate
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r-checkpoint
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r-chemometrics
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r-chron
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r-circlize
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r-class
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r-classint
|
r-classint: created new package (#6481)
|
2017-11-28 09:29:29 +01:00 |
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r-cli
|
r-cli: new package (#6476)
|
2017-11-28 09:21:12 +01:00 |
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r-clipr
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r-cluster
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r-clusterprofiler
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r-coda
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r-codetools
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r-coin
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r-colorspace
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r-complexheatmap
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r-corpcor
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r-corrplot
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r-covr
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r-cowplot
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r-crayon
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r-crosstalk
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r-cubature
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r-cubist
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r-curl
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r-data-table
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r-dbi
|
Adding list_url to several R module packages (#6474)
|
2017-11-28 09:26:06 +01:00 |
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r-dbplyr
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r-delayedarray
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r-deldir
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r-dendextend
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r-deoptim
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r-deoptimr
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r-deseq
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r-deseq2
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r-desolve
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r-devtools
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r-diagrammer
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r-dichromat
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r-diffusionmap
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r-digest
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r-diptest
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r-dnacopy
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r-do-db
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r-domc
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r-doparallel
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r-dorng
|
Adding list_url to several R module packages (#6474)
|
2017-11-28 09:26:06 +01:00 |
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r-dose
|
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r-downloader
|
Adding list_url to several R module packages (#6474)
|
2017-11-28 09:26:06 +01:00 |
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r-dplyr
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r-dt
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r-dtw
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r-dygraphs
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r-e1071
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r-edger
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r-ellipse
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r-ensembldb
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r-ergm
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r-evaluate
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r-expm
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r-factoextra
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r-factominer
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r-ff
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r-fftwtools
|
r-fftwtools: new package (#6532)
|
2017-12-03 16:20:32 -07:00 |
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r-fgsea
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r-filehash
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r-flashclust
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r-flexmix
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r-fnn
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r-forcats
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r-foreach
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r-forecast
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r-foreign
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r-formatr
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r-formula
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r-fpc
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r-fracdiff
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r-futile-logger
|
Adding list_url to several R module packages (#6474)
|
2017-11-28 09:26:06 +01:00 |
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r-futile-options
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r-gbm
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r-gcrma
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r-gdata
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r-geiger
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r-genefilter
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r-geneplotter
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r-genomeinfodb
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r-genomeinfodbdata
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r-genomicalignments
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r-genomicfeatures
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r-genomicranges
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r-geomorph
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r-geoquery
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r-geosphere
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r-getoptlong
|
Adding list_url to several R module packages (#6474)
|
2017-11-28 09:26:06 +01:00 |
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r-ggally
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r-ggbio
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r-ggdendro
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r-ggjoy
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r-ggmap
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r-ggplot2
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r-ggpubr
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r-ggrepel
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r-ggridges
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r-ggsci
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r-ggvis
|
Adding list_url to several R module packages (#6474)
|
2017-11-28 09:26:06 +01:00 |
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r-gistr
|
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r-git2r
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r-glmnet
|
Adding list_url to several R module packages (#6474)
|
2017-11-28 09:26:06 +01:00 |
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r-globaloptions
|
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r-glue
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r-gmodels
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r-gmp
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r-go-db
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r-googlevis
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r-gosemsim
|
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r-gostats
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r-gplots
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r-graph
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r-gridbase
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r-gridextra
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r-gseabase
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r-gsubfn
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r-gtable
|
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r-gtools
|
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r-gtrellis
|
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r-gviz
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r-haven
|
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r-hexbin
|
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r-highr
|
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r-hmisc
|
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r-hms
|
Adding list_url to r-hms package (#6473)
|
2017-11-27 14:40:02 -07:00 |
|
r-htmltable
|
|
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r-htmltools
|
Adding list_url to several R module packages (#6474)
|
2017-11-28 09:26:06 +01:00 |
|
r-htmlwidgets
|
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r-httpuv
|
Adding list_url to several R module packages (#6474)
|
2017-11-28 09:26:06 +01:00 |
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r-httr
|
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r-hwriter
|
Adding list_url to several R module packages (#6474)
|
2017-11-28 09:26:06 +01:00 |
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r-hypergraph
|
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r-ica
|
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r-igraph
|
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r-illuminaio
|
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r-impute
|
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r-influencer
|
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r-inline
|
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r-interactivedisplaybase
|
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r-ipred
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r-iranges
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r-irdisplay
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r-irkernel
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r-irlba
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r-iso
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r-iterators
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r-janitor
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r-jpeg
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r-jsonlite
|
Adding list_url to several R module packages (#6474)
|
2017-11-28 09:26:06 +01:00 |
|
r-kegg-db
|
|
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r-kegggraph
|
r-kegggraph: Create new package. (#6580)
|
2017-12-06 18:29:22 -07:00 |
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r-keggrest
|
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r-kernlab
|
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r-kernsmooth
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r-kknn
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r-knitr
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r-labeling
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r-lambda-r
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r-laplacesdemon
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r-lars
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r-lattice
|
Adding list_url to several R module packages (#6474)
|
2017-11-28 09:26:06 +01:00 |
|
r-latticeextra
|
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r-lava
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r-lazyeval
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r-leaflet
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r-leaps
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r-learnbayes
|
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r-limma
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r-lme4
|
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r-lmtest
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r-locfit
|
Adding list_url to several R module packages (#6474)
|
2017-11-28 09:26:06 +01:00 |
|
r-log4r
|
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r-lpsolve
|
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r-lsei
|
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r-lubridate
|
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r-magic
|
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r-magrittr
|
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r-makecdfenv
|
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r-maldiquant
|
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r-mapproj
|
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r-maps
|
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r-maptools
|
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r-markdown
|
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r-mass
|
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r-matrix
|
Adding list_url to several R module packages (#6474)
|
2017-11-28 09:26:06 +01:00 |
|
r-matrixmodels
|
|
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r-matrixstats
|
Adding list_url to several R module packages (#6474)
|
2017-11-28 09:26:06 +01:00 |
|
r-mclust
|
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r-mcmcglmm
|
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r-mda
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r-memoise
|
Adding list_url to several R module packages (#6474)
|
2017-11-28 09:26:06 +01:00 |
|
r-mergemaid
|
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r-methodss3
|
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r-mgcv
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r-mime
|
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r-minfi
|
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r-minqa
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r-mixtools
|
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r-mlbench
|
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r-mlinterfaces
|
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r-mnormt
|
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r-modelmetrics
|
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r-modelr
|
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r-modeltools
|
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r-mpm
|
Adding list_url to several R module packages (#6474)
|
2017-11-28 09:26:06 +01:00 |
|
r-msnbase
|
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r-multcomp
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r-multtest
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r-munsell
|
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r-mvtnorm
|
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r-mzid
|
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r-mzr
|
|
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r-nanotime
|
r-nanotime: new package (#6519)
|
2017-11-30 09:12:58 +01:00 |
|
r-ncbit
|
|
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r-ncdf4
|
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r-network
|
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r-networkd3
|
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r-nlme
|
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r-nloptr
|
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r-nmf
|
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r-nnet
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r-nnls
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r-nor1mix
|
Adding list_url to several R module packages (#6474)
|
2017-11-28 09:26:06 +01:00 |
|
r-np
|
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r-numderiv
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r-oligoclasses
|
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r-oo
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r-openssl
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r-org-hs-eg-db
|
r-org-hs-eg-db: Create new package. (#6581)
|
2017-12-06 18:29:04 -07:00 |
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r-organismdbi
|
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r-packrat
|
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r-pacman
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r-pamr
|
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r-party
|
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r-partykit
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r-pathview
|
r-pathview: Create new package. (#6582)
|
2017-12-06 18:29:45 -07:00 |
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r-pbapply
|
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r-pbdzmq
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r-pbkrtest
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r-pcamethods
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r-pcapp
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r-permute
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r-pfam-db
|
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r-phantompeakqualtools
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r-phyloseq
|
r-phyloseq: Create new package. (#6518)
|
2017-11-30 09:13:31 +01:00 |
|
r-pkgconfig
|
Adding list_url to several R module packages (#6474)
|
2017-11-28 09:26:06 +01:00 |
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r-pkgmaker
|
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r-plogr
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r-plotly
|
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r-plotrix
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r-pls
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r-plyr
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r-pmcmr
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r-png
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r-prabclus
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r-praise
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r-preprocesscore
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r-prettyunits
|
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r-prodlim
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r-progress
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r-protgenerics
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r-proto
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r-proxy
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r-pryr
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r-psych
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r-ptw
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r-purrr
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r-quadprog
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r-quantmod
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r-quantreg
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r-quantro
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r-qvalue
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r-r6
|
Adding list_url to several R module packages (#6474)
|
2017-11-28 09:26:06 +01:00 |
|
r-randomforest
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r-ranger
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r-raster
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r-rbgl
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r-rbokeh
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r-rcolorbrewer
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|
r-rcpp
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r-rcpparmadillo
|
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r-rcppcctz
|
r-rcppcctz: created new package (#6480)
|
2017-11-28 09:28:42 +01:00 |
|
r-rcppeigen
|
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|
r-rcppprogress
|
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r-rcurl
|
package r-rcurl: boilerplate cleanup (#6771)
|
2018-01-02 10:58:03 -08:00 |
|
r-rda
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r-readr
|
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r-readxl
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r-registry
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r-rematch
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r-reordercluster
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r-reportingtools
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r-repr
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r-reprex
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r-reshape
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r-reshape2
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r-rex
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r-rgdal
|
r-rgdal: Create new package. (#6593)
|
2017-12-08 10:18:29 -07:00 |
|
r-rgl
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r-rgooglemaps
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r-rhdf5
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r-rhtslib
|
r-rhtslib: added build dependency on autoconf (#6627)
|
2017-12-08 11:18:25 +01:00 |
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r-rinside
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r-rjava
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r-rjson
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r-rjsonio
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r-rlang
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r-rmarkdown
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r-rminer
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r-rmpfr
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r-rmpi
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r-rmysql
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r-rngtools
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r-robustbase
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r-rocr
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r-rodbc
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r-roxygen2
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r-rpart
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r-rpart-plot
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r-rpostgresql
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r-rsamtools
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r-rsnns
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r-rsqlite
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r-rstan
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r-rstudioapi
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r-rtracklayer
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r-rtsne
|
r-rtsne: Create new package (#6470)
|
2017-11-27 13:54:53 -07:00 |
|
r-rvcheck
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r-rvest
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r-rzmq
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r-s4vectors
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r-samr
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r-sandwich
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r-scales
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r-scatterplot3d
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r-sdmtools
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r-segmented
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r-selectr
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r-seqinr
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|
|
r-seurat
|
r-seurat: Create new package (#6477)
|
2017-11-28 09:27:14 +01:00 |
|
r-sfsmisc
|
|
|
|
r-shape
|
|
|
|
r-shiny
|
Adding list_url to several R module packages (#6474)
|
2017-11-28 09:26:06 +01:00 |
|
r-shortread
|
|
|
|
r-siggenes
|
|
|
|
r-simpleaffy
|
|
|
|
r-sn
|
|
|
|
r-snow
|
|
|
|
r-som
|
|
|
|
r-somaticsignatures
|
|
|
|
r-sourcetools
|
|
|
|
r-sp
|
|
|
|
r-sparsem
|
|
|
|
r-spdep
|
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r-speedglm
|
|
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|
r-sqldf
|
|
|
|
r-stanheaders
|
|
|
|
r-statmod
|
|
|
|
r-statnet-common
|
|
|
|
r-stringi
|
|
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|
r-stringr
|
|
|
|
r-strucchange
|
|
|
|
r-subplex
|
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|
r-summarizedexperiment
|
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|
r-survey
|
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|
r-survival
|
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r-sva
|
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r-tarifx
|
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|
r-tclust
|
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r-tensora
|
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|
r-testit
|
|
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|
r-testthat
|
|
|
|
r-th-data
|
|
|
|
r-threejs
|
|
|
|
r-tibble
|
Adding list_url to several R module packages (#6474)
|
2017-11-28 09:26:06 +01:00 |
|
r-tidycensus
|
r-tidycensus: Create new package. (#6595)
|
2017-12-08 10:18:45 -07:00 |
|
r-tidyr
|
|
|
|
r-tiff
|
|
|
|
r-tigris
|
r-tigris: Create new package. (#6591)
|
2017-12-08 10:18:11 -07:00 |
|
r-timedate
|
|
|
|
r-topgo
|
r-topgo: Create new package. (#6479)
|
2017-11-28 09:27:36 +01:00 |
|
r-trimcluster
|
|
|
|
r-trust
|
|
|
|
r-tseries
|
|
|
|
r-tsne
|
|
|
|
r-ttr
|
|
|
|
r-udunits2
|
r-udunits2: new package r-udunits2 (#6533)
|
2017-12-01 11:16:35 +01:00 |
|
r-units
|
r-units: new package (#6531)
|
2017-12-01 05:26:05 +01:00 |
|
r-utils
|
|
|
|
r-uuid
|
|
|
|
r-variantannotation
|
|
|
|
r-varselrf
|
|
|
|
r-vcd
|
|
|
|
r-vegan
|
|
|
|
r-vgam
|
|
|
|
r-viridis
|
|
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|
r-viridislite
|
|
|
|
r-visnetwork
|
|
|
|
r-vsn
|
|
|
|
r-whisker
|
|
|
|
r-withr
|
|
|
|
r-xde
|
|
|
|
r-xgboost
|
|
|
|
r-xlconnect
|
|
|
|
r-xlconnectjars
|
|
|
|
r-xlsx
|
|
|
|
r-xlsxjars
|
|
|
|
r-xmapbridge
|
|
|
|
r-xml
|
|
|
|
r-xml2
|
|
|
|
r-xtable
|
|
|
|
r-xts
|
|
|
|
r-xvector
|
|
|
|
r-yaml
|
|
|
|
r-yapsa
|
|
|
|
r-yaqcaffy
|
|
|
|
r-yarn
|
|
|
|
r-zlibbioc
|
|
|
|
r-zoo
|
|
|
|
raft
|
|
|
|
raja
|
|
|
|
randfold
|
|
|
|
random123
|
|
|
|
randrproto
|
|
|
|
ravel
|
|
|
|
raxml
|
|
|
|
ray
|
|
|
|
rdp-classifier
|
|
|
|
readline
|
|
|
|
recordproto
|
|
|
|
redundans
|
|
|
|
relion
|
relion - added new stable version 2.1 (#6706)
|
2017-12-18 10:38:20 -08:00 |
|
rempi
|
|
|
|
rename
|
|
|
|
rendercheck
|
|
|
|
renderproto
|
|
|
|
repeatmasker
|
|
|
|
resourceproto
|
|
|
|
revbayes
|
|
|
|
rgb
|
|
|
|
rhash
|
|
|
|
rlwrap
|
|
|
|
rmlab
|
Add: lines-are-beautiful (#6784)
|
2017-12-30 12:29:27 -08:00 |
|
rockstar
|
|
|
|
root
|
|
|
|
rose
|
|
|
|
rr
|
|
|
|
rsbench
|
|
|
|
rsem
|
rsem: update version 1.3.0 md5sum (#6650)
|
2018-01-02 21:15:40 -06:00 |
|
rstart
|
|
|
|
rsync
|
|
|
|
rtags
|
|
|
|
rtax
|
|
|
|
ruby
|
new packages: biopieces and dependencies (#6478)
|
2017-12-12 18:35:13 -08:00 |
|
ruby-gnuplot
|
new packages: biopieces and dependencies (#6478)
|
2017-12-12 18:35:13 -08:00 |
|
ruby-narray
|
new packages: biopieces and dependencies (#6478)
|
2017-12-12 18:35:13 -08:00 |
|
ruby-rubyinline
|
new packages: biopieces and dependencies (#6478)
|
2017-12-12 18:35:13 -08:00 |
|
ruby-terminal-table
|
new packages: biopieces and dependencies (#6478)
|
2017-12-12 18:35:13 -08:00 |
|
rust
|
|
|
|
rust-bindgen
|
|
|
|
sabre
|
|
|
|
salmon
|
salmon: Add version 0.9.1 (#6516)
|
2017-12-02 12:45:10 -07:00 |
|
sambamba
|
|
|
|
samrai
|
|
|
|
samtools
|
|
|
|
sandbox
|
|
|
|
sas
|
|
|
|
satsuma2
|
|
|
|
savanna
|
|
|
|
saws
|
|
|
|
sbt
|
|
|
|
scala
|
|
|
|
scalasca
|
|
|
|
scalpel
|
|
|
|
scan-for-matches
|
new packages: biopieces and dependencies (#6478)
|
2017-12-12 18:35:13 -08:00 |
|
scons
|
|
|
|
scorec-core
|
|
|
|
scorep
|
|
|
|
scotch
|
|
|
|
scr
|
update scr package for cray (#6407)
|
2017-11-28 10:33:45 -08:00 |
|
screen
|
|
|
|
scripts
|
|
|
|
scrnsaverproto
|
|
|
|
sctk
|
|
|
|
sdl2
|
|
|
|
sdl2-image
|
|
|
|
sed
|
|
|
|
seqprep
|
|
|
|
seqtk
|
|
|
|
serf
|
|
|
|
sessreg
|
|
|
|
setxkbmap
|
|
|
|
sga
|
|
|
|
shapeit
|
|
|
|
shared-mime-info
|
|
|
|
shiny-server
|
|
|
|
shortstack
|
|
|
|
showfont
|
|
|
|
sickle
|
|
|
|
siesta
|
|
|
|
signalp
|
|
|
|
signify
|
Add new package signify (#6645)
|
2017-12-16 19:47:59 -07:00 |
|
silo
|
|
|
|
simplemoc
|
|
|
|
simul
|
|
|
|
simulationio
|
|
|
|
singularity
|
singularity - added master branch (#6631)
|
2018-01-02 21:47:21 -06:00 |
|
slepc
|
slepc: add 3.8.2 (#6724)
|
2017-12-19 15:40:30 +01:00 |
|
slurm
|
|
|
|
smalt
|
|
|
|
smc
|
|
|
|
smproxy
|
|
|
|
snakemake
|
|
|
|
snap
|
|
|
|
snap-berkeley
|
|
|
|
snap-korf
|
|
|
|
snappy
|
|
|
|
snbone
|
|
|
|
sniffles
|
|
|
|
snptest
|
|
|
|
soap2
|
|
|
|
soapindel
|
|
|
|
soapsnp
|
|
|
|
somatic-sniper
|
|
|
|
sortmerna
|
|
|
|
sosflow
|
|
|
|
sowing
|
|
|
|
sox
|
|
|
|
spades
|
SPAdes: add version 3.11.1 (#6668)
|
2017-12-13 08:57:29 +01:00 |
|
spark
|
|
|
|
sparsehash
|
|
|
|
sparta
|
|
|
|
spdlog
|
|
|
|
spectrum-mpi
|
|
|
|
speex
|
|
|
|
sph2pipe
|
|
|
|
spherepack
|
|
|
|
spindle
|
|
|
|
spot
|
|
|
|
sqlite
|
sqlite package: apply B0 patch to additional versions (#6728)
|
2017-12-19 11:06:39 -08:00 |
|
squid
|
|
|
|
sra-toolkit
|
|
|
|
sspace-longread
|
|
|
|
sspace-standard
|
|
|
|
sst-dumpi
|
|
|
|
sst-macro
|
|
|
|
stacks
|
|
|
|
staden-io-lib
|
|
|
|
star
|
|
|
|
star-ccm-plus
|
|
|
|
stat
|
|
|
|
stc
|
|
|
|
stream
|
|
|
|
strelka
|
|
|
|
stress
|
|
|
|
stringtie
|
|
|
|
structure
|
|
|
|
sublime-text
|
|
|
|
subread
|
subread: Add version 1.6.0 (#6615)
|
2017-12-08 10:26:18 +01:00 |
|
subversion
|
|
|
|
suite-sparse
|
suite-sparse: support 64bit BLAS (#6767)
|
2018-01-03 09:58:19 -06:00 |
|
sumaclust
|
|
|
|
sundials
|
|
|
|
superlu
|
|
|
|
superlu-dist
|
|
|
|
superlu-mt
|
|
|
|
sw4lite
|
|
|
|
swarm
|
|
|
|
swfft
|
swfft: inject CC/CXX (#6666)
|
2017-12-12 17:25:48 -07:00 |
|
swiftsim
|
|
|
|
swig
|
|
|
|
symengine
|
|
|
|
sympol
|
|
|
|
sz
|
|
|
|
tabix
|
|
|
|
talloc
|
|
|
|
tantan
|
new package: tantan (#6792)
|
2018-01-02 12:00:13 -08:00 |
|
tar
|
|
|
|
targetp
|
|
|
|
task
|
|
|
|
taskd
|
|
|
|
tasmanian
|
tasmanian: add new package (#6659)
|
2017-12-13 16:01:51 +01:00 |
|
tassel
|
|
|
|
tau
|
|
|
|
tcl
|
|
|
|
tcoffee
|
|
|
|
tcsh
|
|
|
|
tealeaf
|
|
|
|
tetgen
|
|
|
|
tethex
|
|
|
|
texinfo
|
|
|
|
texlive
|
|
|
|
the-platinum-searcher
|
|
|
|
the-silver-searcher
|
|
|
|
thrift
|
|
|
|
thrust
|
|
|
|
tig
|
|
|
|
tinyxml
|
|
|
|
tinyxml2
|
|
|
|
tioga
|
Tioga package: Explicitly list MPI compilers for Cmake (#6741)
|
2018-01-02 13:14:22 -08:00 |
|
tk
|
|
|
|
tmalign
|
|
|
|
tmhmm
|
|
|
|
tmux
|
Update tmux to 2.6 (#6597)
|
2017-12-08 10:13:22 -07:00 |
|
tmuxinator
|
|
|
|
tophat
|
|
|
|
tppred
|
|
|
|
transabyss
|
|
|
|
transdecoder
|
|
|
|
transposome
|
|
|
|
transset
|
|
|
|
trapproto
|
|
|
|
tree
|
|
|
|
trf
|
|
|
|
triangle
|
|
|
|
trilinos
|
Update CGNS and add CGNS capability to Trilinos (#6568)
|
2017-12-05 14:33:36 -07:00 |
|
trimgalore
|
|
|
|
trimmomatic
|
|
|
|
turbine
|
|
|
|
turbomole
|
|
|
|
tut
|
|
|
|
twm
|
|
|
|
tycho2
|
|
|
|
typhonio
|
|
|
|
uberftp
|
|
|
|
ucx
|
|
|
|
udunits2
|
|
|
|
ufo-core
|
|
|
|
ufo-filters
|
|
|
|
uncrustify
|
|
|
|
unibilium
|
|
|
|
unison
|
|
|
|
units
|
|
|
|
unixodbc
|
|
|
|
usearch
|
|
|
|
util-linux
|
|
|
|
util-macros
|
|
|
|
uuid
|
|
|
|
valgrind
|
|
|
|
vampirtrace
|
|
|
|
vardictjava
|
|
|
|
varscan
|
|
|
|
vc
|
|
|
|
vcftools
|
|
|
|
vcsh
|
|
|
|
vdt
|
|
|
|
vecgeom
|
|
|
|
veclibfort
|
|
|
|
vegas2
|
|
|
|
velvet
|
|
|
|
videoproto
|
|
|
|
viennarna
|
ViennaRNA: adding version 2.4.3 + disable swig (#6408)
|
2017-11-27 16:45:43 -07:00 |
|
viewres
|
|
|
|
vim
|
Update vim to 8.0.1376 (#6599)
|
2017-12-08 10:29:50 +01:00 |
|
virtualgl
|
|
|
|
visit
|
|
|
|
vizglow
|
|
|
|
vmatch
|
|
|
|
voropp
|
|
|
|
votca-csg
|
|
|
|
votca-ctp
|
|
|
|
votca-moo
|
|
|
|
votca-tools
|
|
|
|
votca-xtp
|
|
|
|
vpfft
|
|
|
|
vpic
|
|
|
|
vsearch
|
|
|
|
vtk
|
|
|
|
vtkh
|
updates to conduit and ascent packages (new PR) (#6584)
|
2017-12-08 13:43:12 -08:00 |
|
vtkm
|
|
|
|
wannier90
|
|
|
|
wget
|
|
|
|
windowswmproto
|
|
|
|
wt
|
|
|
|
wx
|
wxWidgets: Fix builds (#6560)
|
2017-12-07 08:33:08 +01:00 |
|
wxpropgrid
|
|
|
|
x11perf
|
|
|
|
xapian-core
|
|
|
|
xauth
|
|
|
|
xbacklight
|
|
|
|
xbiff
|
|
|
|
xbitmaps
|
|
|
|
xcalc
|
|
|
|
xcb-demo
|
|
|
|
xcb-proto
|
|
|
|
xcb-util
|
|
|
|
xcb-util-cursor
|
|
|
|
xcb-util-errors
|
|
|
|
xcb-util-image
|
|
|
|
xcb-util-keysyms
|
|
|
|
xcb-util-renderutil
|
|
|
|
xcb-util-wm
|
|
|
|
xclip
|
|
|
|
xclipboard
|
|
|
|
xclock
|
|
|
|
xcmiscproto
|
|
|
|
xcmsdb
|
|
|
|
xcompmgr
|
|
|
|
xconsole
|
|
|
|
xcursor-themes
|
|
|
|
xcursorgen
|
|
|
|
xdbedizzy
|
|
|
|
xditview
|
|
|
|
xdm
|
|
|
|
xdpyinfo
|
|
|
|
xdriinfo
|
|
|
|
xedit
|
|
|
|
xerces-c
|
|
|
|
xev
|
|
|
|
xextproto
|
|
|
|
xeyes
|
|
|
|
xf86bigfontproto
|
|
|
|
xf86dga
|
|
|
|
xf86dgaproto
|
|
|
|
xf86driproto
|
|
|
|
xf86miscproto
|
|
|
|
xf86rushproto
|
|
|
|
xf86vidmodeproto
|
|
|
|
xfd
|
|
|
|
xfindproxy
|
|
|
|
xfontsel
|
|
|
|
xfs
|
|
|
|
xfsinfo
|
|
|
|
xfwp
|
|
|
|
xgamma
|
|
|
|
xgc
|
|
|
|
xhost
|
|
|
|
xineramaproto
|
|
|
|
xinit
|
|
|
|
xinput
|
|
|
|
xkbcomp
|
|
|
|
xkbdata
|
|
|
|
xkbevd
|
|
|
|
xkbprint
|
|
|
|
xkbutils
|
|
|
|
xkeyboard-config
|
|
|
|
xkill
|
|
|
|
xload
|
|
|
|
xlogo
|
|
|
|
xlsatoms
|
|
|
|
xlsclients
|
|
|
|
xlsfonts
|
|
|
|
xmag
|
|
|
|
xman
|
|
|
|
xmessage
|
|
|
|
xmh
|
|
|
|
xmlf90
|
atom-dft: new package plus dependencies (#6653)
|
2018-01-02 20:32:37 -06:00 |
|
xmlto
|
|
|
|
xmodmap
|
|
|
|
xmore
|
|
|
|
xorg-cf-files
|
|
|
|
xorg-docs
|
|
|
|
xorg-gtest
|
|
|
|
xorg-server
|
|
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xorg-sgml-doctools
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xphelloworld
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xplor-nih
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xplsprinters
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xpr
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xprehashprinterlist
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xprop
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xproto
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xproxymanagementprotocol
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xqilla
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xrandr
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xrdb
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xrefresh
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xrootd
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Adding openssl dependency to xrootd. Closes #6601 (#6618)
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2017-12-08 10:33:08 +01:00 |
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xrx
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xsbench
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xscope
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xsdk
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xsdk: update xsdk@develop to use sundials, plasma, magma (#6649)
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2017-12-12 09:31:08 -08:00 |
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xsdktrilinos
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xset
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xsetmode
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xsetpointer
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xsetroot
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xsimd
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Add Maintainer (#6575)
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2017-12-05 14:27:56 -07:00 |
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xsm
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xstdcmap
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xtensor
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Add Maintainer (#6575)
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2017-12-05 14:27:56 -07:00 |
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xterm
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xtl
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Add Maintainer (#6575)
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2017-12-05 14:27:56 -07:00 |
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xtrans
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xtrap
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xts
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xvidtune
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xvinfo
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xwd
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xwininfo
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xwud
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xz
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yajl
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yaml-cpp
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yasm
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yorick
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z3
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zeromq
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zfp
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zip
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zlib
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zoltan
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zsh
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Update zsh to 5.4.2 (#6609)
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2017-12-08 10:19:40 -07:00 |
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zstd
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