lingnanyuan cfb685aa32 r-ptw: Create new package. (#6062)		2017-10-31 18:29:45 -06:00
..
abinit
abyss	fixing abyss (#5973)	2017-10-28 17:05:52 +02:00
ack
activeharmony
adept-utils
adios
adios2	Fix incorrect checksum value for adios2 tarball (#6054)	2017-10-31 15:08:08 -06:00
adlbx
adol-c
albert
alglib
allinea-forge
allinea-reports
allpaths-lg
alquimia
alsa-lib
amg	Add a new package for AMG and fix build issues in the amg2013 package (#5909)	2017-10-24 21:06:33 -06:00
amg2013	Add a new package for AMG and fix build issues in the amg2013 package (#5909)	2017-10-24 21:06:33 -06:00
ampliconnoise
amr-exp-parabolic
amrex
andi
angsd
ant
antlr
ape
apex
applewmproto
appres
apr
apr-util
archer
argtable
armadillo	armadillo: use libs to provide arpack and superlu libraries (#5777)	2017-10-16 12:57:01 +02:00
arpack-ng
asciidoc
aspa	add newlines at end of some package files	2017-10-24 10:05:36 +02:00
aspell	Add package for aspell and ass't dictionaries (#3890)	2017-10-09 14:14:19 -07:00
aspell6-de	Add package for aspell and ass't dictionaries (#3890)	2017-10-09 14:14:19 -07:00
aspell6-en	Add package for aspell and ass't dictionaries (#3890)	2017-10-09 14:14:19 -07:00
aspell6-es	Add package for aspell and ass't dictionaries (#3890)	2017-10-09 14:14:19 -07:00
assimp
astra
astral
astyle
atk
atlas	remove wildcards from make spack core and packages	2017-10-24 10:05:36 +02:00
atompaw
atop
augustus
autoconf
autodock-vina
autogen
automaded
automake
bamtools
bamutil
bash
bash-completion
bats
bazel
bbcp
bbmap
bcftools	Add old version to bcftools (#5907)	2017-10-25 12:20:42 +02:00
bcl2fastq2	bcl2fastq needs with working_dir: after changes in #5776 (#5803)	2017-10-19 08:59:25 +02:00
bdftopcf
bdw-gc
bear
beast2
bedtools2	adding bedtools2 v2.23.0 (#5911)	2017-10-25 12:16:10 +02:00
beforelight
benchmark
berkeley-db
bertini
bib2xhtml
bigreqsproto
binutils
bioawk
bison	various fixes for macOS high sierra (#5647)	2017-10-12 11:41:57 -07:00
bitmap
blast-plus
blat
blaze	Add v3.2 of Blaze library (#5992)	2017-10-31 08:33:55 +01:00
bliss
blitz
bml
boost	boost: remove duplicate patch (#5934)	2017-10-25 12:00:50 -07:00
boostmplcartesianproduct
bowtie
bowtie2	Add bowtie2@2.3.0, fix dependencies and sbangs (#5834)	2017-10-29 15:40:00 -06:00
boxlib
bpp-core
bpp-phyl
bpp-seq
bpp-suite
braker
branson
brigand
bsseeker2
bucky
busco
butter
bwa	bwa: add 0.7.17 (#5902)	2017-10-25 12:21:18 +02:00
byobu	Byobu: new package (#5974)	2017-10-27 10:43:45 -07:00
bzip2
c-blosc
caffe
cairo
caliper
callpath
candle-benchmarks	candle-benchmarks: initial commit (#6020)	2017-10-31 09:11:04 -06:00
cantera
canu
cap3
cares
cask
catch
cbench
cblas
cbtf
cbtf-argonavis
cbtf-argonavis-gui
cbtf-krell
cbtf-lanl
ccache
cctools
cdbfasta
cdd
cddlib
cdhit
cdo	Update for 'cdo'. (#5947)	2017-10-25 13:24:19 +02:00
cereal
cfitsio
cgal
cgm
cgns
charm	Fix bare 'except:' to placate errors in new flake8 version.	2017-10-24 10:05:36 +02:00
check
chlorop
chombo
cityhash
clamr
cleaveland4
cleverleaf
clfft
clhep
cloc
cloog
cloverleaf
cloverleaf3d
clustalo
clustalw
cmake
cmocka
cmor
cnmem
cnpy
cns-nospec
cntk
cntk1bitsgd
codar-cheetah
coevp
cohmm	add newlines at end of some package files	2017-10-24 10:05:36 +02:00
coinhsl
comd	comd: update the git repo (#6027)	2017-10-30 14:47:16 -06:00
compiz
compositeproto
conduit
constype
converge
coreutils
corset
cosmomc
cosp2	add newlines at end of some package files	2017-10-24 10:05:36 +02:00
cp2k
cppad
cppcheck
cpprestsdk
cppunit
cppzmq
cram
cryptopp
cscope
csdp
cub
cube
cuda
cuda-memtest
cudnn
cufflinks
cups
curl	adding http2 support (#5628)	2017-10-07 09:58:56 -06:00
cvs
czmq
dakota
daligner
damageproto
damselfly
darshan-runtime
darshan-util
dash
datamash
dataspaces
dbus
dealii	dealii: remove bzip2 dependency for newer versions (#6022)	2017-10-29 07:39:51 -06:00
dejagnu
delly2	delly2: new package (#5820)	2017-10-25 13:55:13 +02:00
dia
dialign-tx
direnv
discovar
dlpack	Add a package: dmlc/mxnet. (#3579)	2017-10-10 13:56:26 -07:00
dmlc-core	Add a package: dmlc/mxnet. (#3579)	2017-10-10 13:56:26 -07:00
dmxproto
docbook-xml
docbook-xsl
dos2unix
double-conversion
doxygen
dri2proto
dri3proto
dtcmp
dyninst
ea-utils
easybuild
ebms
eccodes	Update for 'eccodes'. (#5899)	2017-10-25 13:48:55 +02:00
ecp-proxy-apps	ecp-proxy-suite: add nekbone and candle-benchmarks (#6053)	2017-10-31 13:11:08 -06:00
editres
eigen
elemental
elfutils
elk
elpa
emacs
emboss
encodings
environment-modules
es
esmf
espresso
etsf-io
everytrace
everytrace-example
evieext
exabayes
exampm
exasp2
exmcutils
exodusii	Exodus: skip the -G "Unix Makefiles" part (#5906)	2017-10-26 13:50:18 -06:00
exonerate
expat
expect
extrae
exuberant-ctags
f90cache
falcon
farmhash
fastjar
fastmath
fastphase
fastq-screen
fastqc
fastqvalidator	switching downloads to git (#5659)	2017-10-09 17:07:13 -06:00
fastx-toolkit
fenics
ferret
ffmpeg
fftw
fimpute
findutils
fio
fish
fixesproto
flac
flang	flang: fixed a typo (#6048)	2017-10-31 14:21:29 +01:00
flann
flash
flecsale
flecsi
flex
flint
fltk
flux
fmt
foam-extend	remove wildcards from make spack core and packages	2017-10-24 10:05:36 +02:00
folly
font-adobe-75dpi
font-adobe-100dpi
font-adobe-utopia-75dpi
font-adobe-utopia-100dpi
font-adobe-utopia-type1
font-alias
font-arabic-misc
font-bh-75dpi
font-bh-100dpi
font-bh-lucidatypewriter-75dpi
font-bh-lucidatypewriter-100dpi
font-bh-ttf
font-bh-type1
font-bitstream-75dpi
font-bitstream-100dpi
font-bitstream-speedo
font-bitstream-type1
font-cronyx-cyrillic
font-cursor-misc
font-daewoo-misc
font-dec-misc
font-ibm-type1
font-isas-misc
font-jis-misc
font-micro-misc
font-misc-cyrillic
font-misc-ethiopic
font-misc-meltho
font-misc-misc
font-mutt-misc
font-schumacher-misc
font-screen-cyrillic
font-sony-misc
font-sun-misc
font-util
font-winitzki-cyrillic
font-xfree86-type1
fontcacheproto
fontconfig
fontsproto
fonttosfnt
freebayes
freetype
fseq
fsl
fslsfonts
fstobdf
funhpc
gapcloser
gapfiller
gasnet
gaussian
gawk
gblocks
gcc	various fixes for macOS high sierra (#5647)	2017-10-12 11:41:57 -07:00
gccmakedep
gccxml
gconf
gdal
gdb
gdbm	gdbm: pass in proper CPPFLAGS (#5893)	2017-10-25 07:09:41 +02:00
gdk-pixbuf
geant4
gearshifft
gemmlowp
genemark-et
genometools
geos
gettext	gettext: fix prefix (#5749)	2017-10-13 10:52:55 +02:00
gflags
ghostscript
ghostscript-fonts
giflib
git
git-lfs
gl2ps
glew
glib
glm
global
globalarrays
globus-toolkit
glog
glpk
glproto
gmake
gmap-gsnap
gmime
gmp
gmsh
gnat
gnu-prolog
gnupg
gnuplot	gnuplot: add 5.2.0 and 5.0.7 (#5979)	2017-10-27 08:20:34 +02:00
gnutls
go	Add info for go@1.9.2 (#5989)	2017-10-27 08:13:33 +02:00
go-bootstrap
gobject-introspection
googletest
gource
gperf
gperftools
grackle
gradle
grandr
graphlib
graphmap
graphviz
grib-api
groff
gromacs
gsl	gsl: add 2.4 (#5768)	2017-10-14 16:39:43 -06:00
gtkorvo-atl
gtkorvo-cercs-env
gtkorvo-dill
gtkorvo-enet
gtkplus
gts
guile
h5hut
h5part
h5utils
h5z-zfp
hacckernels
hadoop
hapcut2
haploview
harfbuzz
harminv
hdf
hdf5	Update for 'hdf5'. (#5790)	2017-10-24 11:09:08 +02:00
hdf5-blosc	Fix bare 'except:' to placate errors in new flake8 version.	2017-10-24 10:05:36 +02:00
help2man
hepmc
heppdt
highfive
highwayhash
hisat2
hmmer
hoomd-blue
hpccg
hpctoolkit
hpctoolkit-externals
hpgmg	new package: hpgmg (#4888)	2017-10-20 17:34:55 -07:00
hpl
hpx
hpx5
hsakmt
hstr
htop
htslib	Fix tarball URL's for htslib (#5993)	2017-10-30 22:49:52 -06:00
httpie
hub
hunspell
hwloc
hybpiper
hydra
hypre	hypre: make mpi dependency optional (#5905)	2017-10-24 18:53:12 -07:00
ibmisc
iceauth
icedtea
icet
ico
icu4c
id3lib
idba
igraph
ilmbase
image-magick
imake
impute2
infernal
inputproto
intel
intel-daal	add updated 2017 versions of Intel packages (#5957)	2017-10-29 15:38:10 -06:00
intel-gpu-tools
intel-ipp
intel-mkl	add updated 2017 versions of Intel packages (#5957)	2017-10-29 15:38:10 -06:00
intel-mpi	add updated 2017 versions of Intel packages (#5957)	2017-10-29 15:38:10 -06:00
intel-parallel-studio
intel-tbb	add updated 2017 versions of Intel packages (#5957)	2017-10-29 15:38:10 -06:00
intltool
ior
iozone
ipopt
isaac
isaac-server
isl
itstool
itsx
jags
jansson	jansson: enable shared library (#5857)	2017-10-23 13:32:51 +02:00
jasper
jdk
jemalloc
jmol
jq
json-c
jsoncpp
judy
julia
kahip
kaks-calculator	kaks-calculator: new package (#5725)	2017-10-12 12:47:11 -06:00
kaldi
kallisto
kbproto
kdiff3
kealib
kentutils
kmergenie
kokkos
krims	Add krims and lazyten (#5771)	2017-10-15 11:45:11 -06:00
kripke
laghos	Laghos: new package (#5956)	2017-10-26 09:18:57 -06:00
lammps
last
latte
launchmon
lazyten	Add krims and lazyten (#5771)	2017-10-15 11:45:11 -06:00
lbann	Lbann flags (#5747)	2017-10-12 20:23:38 -06:00
lbxproxy
lcals
lcms
ldc
ldc-bootstrap
legion	legion: add v17.10.0 (#6019)	2017-10-28 12:09:39 -06:00
leveldb
lftp
libaec	libaec: add v1.0.2 and generic url (#6017)	2017-10-27 18:22:27 -06:00
libaio
libapplewm
libarchive
libassuan
libatomic-ops
libbeagle
libbsd
libbson
libcanberra
libcap
libcerf
libcircle
libconfig
libctl
libdivsufsort
libdmx
libdrm
libdwarf
libedit
libelf
libemos
libepoxy
libevent
libevpath
libfabric
libffi
libffs
libfontenc
libfs
libgcrypt
libgd
libgit2
libgpg-error
libgpuarray
libgtextutils
libharu
libhio
libice
libiconv
libint
libjpeg
libjpeg-turbo
libksba
liblbxutil
libmatheval
libmesh
libmng
libmongoc
libmonitor
libnbc
libogg
liboldx
libpcap	Initial version of libpcap (#5710)	2017-10-12 07:00:21 -06:00
libpciaccess
libpfm4
libpipeline
libpng	libpng: zlib flags more elegant (#5656)	2017-10-09 21:46:10 +02:00
libpsl
libpthread-stubs
libquo	liquo: added 1.3 and develop (#5781)	2017-10-17 01:36:54 -07:00
libsigsegv
libsm
libsodium
libspatialindex
libsplash
libssh2
libsvm
libszip
libtermkey
libtiff
libtool
libunistring
libunwind
libuuid
libuv
libvorbis
libvterm
libwebsockets
libwindowswm
libx11
libxau
libxaw
libxaw3d
libxc
libxcb
libxcomposite
libxcursor
libxdamage
libxdmcp
libxevie
libxext
libxfixes
libxfont
libxfont2
libxfontcache
libxft
libxi
libxinerama
libxkbfile
libxkbui
libxml2	libxml2: use spack's xz (#5816)	2017-10-19 08:32:37 +02:00
libxmu
libxp
libxpm
libxpresent
libxprintapputil
libxprintutil
libxrandr
libxrender
libxres
libxscrnsaver
libxshmfence
libxslt
libxsmm
libxstream
libxt
libxtrap
libxtst
libxv
libxvmc
libxxf86dga
libxxf86misc
libxxf86vm
libyogrt
libzip
likwid	likwid: Update checksum (#6007)	2017-10-28 12:12:21 -06:00
linkphase3
linux-headers
listres
llvm	Add option to install clang python bindings to llvm (#5774)	2017-10-26 01:46:03 +02:00
llvm-lld
llvm-openmp-ompt
lmdb
lmod
lndir
log4cxx
lrslib
lrzip
lua
lua-bitlib
lua-jit
lua-lpeg
lua-luafilesystem
lua-luaposix
lua-mpack
luit
lulesh	add newlines at end of some package files	2017-10-24 10:05:36 +02:00
lwgrp
lwm2
lz4
lzma
lzo
m4	Revert "Use cflags instead of the args variable (#5756)" (#5765)	2017-10-14 13:55:02 +02:00
mad-numdiff
mafft
magics
magma
makedepend
mallocmc
man-db
mariadb
masa
matio
matlab
maven
maverick
mawk
mbedtls
mcl
mdtest
meep
memaxes
meme
mercurial
mesa
mesa-glu
meshkit
meson
mesquite
metaphysicl
metis
mfem	Laghos: new package (#5956)	2017-10-26 09:18:57 -06:00
microbiomeutil
miniaero
miniamr	miniamr: bump to v1.4.0 (#5975)	2017-10-26 19:51:50 -06:00
miniconda2
miniconda3
minife	minife: version bump to v2.1.0 (#5985)	2017-10-26 11:45:40 -06:00
minighost
minigmg
minimap2	minimap2: new package (#5722)	2017-10-12 10:07:42 -06:00
minimd
minismac2d
minitri	Changed from setting C compiler to setting C++ compiler (#6011)	2017-10-29 07:42:27 -06:00
minixyce
mirdeep
mitofates
mitos
mkfontdir
mkfontscale
mlhka
moab
molcas
mono
mosh
mothur
mozjs
mpc
mpe2
mpest
mpfr
mpibash
mpiblast
mpich
mpifileutils
mpileaks
mpip
mpir
mpix-launch-swift
mrbayes
mrnet
mrtrix3
msgpack-c
mshadow	Add a package: dmlc/mxnet. (#3579)	2017-10-10 13:56:26 -07:00
multitail
multiverso
mummer
mumps
munge
muparser
muscle
muse
muster
mvapich2
mxml
mxnet	Add a package: dmlc/mxnet. (#3579)	2017-10-10 13:56:26 -07:00
nag
nalu	Adding openfast variant to nalu. (#5675)	2017-10-09 20:10:47 -06:00
namd
nano
nanoflann
nasm
nauty
nccl
nccmp
ncdu
ncftp
ncl
nco
ncurses
ncview
ndiff
nekbone	nekbone: add v17 (#5978)	2017-10-31 10:47:24 -06:00
neovim
netcdf	Update for 'netcdf'. (#5819)	2017-10-25 14:30:58 +02:00
netcdf-cxx
netcdf-cxx4
netcdf-fortran
netgauge
netgen
netlib-lapack
netlib-scalapack
nettle
nextflow
nfft
nghttp2
nginx
ngmlr
ninja	ninja: add v1.8.2 (#5625)	2017-10-10 12:50:56 -07:00
ninja-fortran
nmap
nnvm	Add a package: dmlc/mxnet. (#3579)	2017-10-10 13:56:26 -07:00
node-js	Fix node-js : requires openssl min 1.0.2 (#5650)	2017-10-08 17:04:09 -06:00
notmuch
npb
npm
npth
nspr
numactl
numdiff
nut
nwchem
ocaml
oce	Glibc 2.26 does not provide xlocale.h (#5862)	2017-10-25 10:39:32 +02:00
oclock
octave
octave-splines
octopus
of-adios-write	remove wildcards from make spack core and packages	2017-10-24 10:05:36 +02:00
ompss
ompt-openmp
oniguruma
ont-albacore
opari2
openbabel
openblas	remove wildcards from make spack core and packages	2017-10-24 10:05:36 +02:00
opencoarrays
opencv	tweak opencv version (#5623)	2017-10-25 14:37:40 +02:00
openexr
openfast	Add OpenFAST package (wind turbine simulation tool). (#5662)	2017-10-12 11:42:51 -07:00
openfoam-com	fix bugs found with stricter flake8 rules	2017-10-24 10:05:36 +02:00
openfoam-org	remove wildcards from make spack core and packages	2017-10-24 10:05:36 +02:00
openfst
openjpeg
openmc
openmpi
openscenegraph
openspeedshop
openssh
openssl
opium
opus
orfm
orthomcl
osu-micro-benchmarks
otf
otf2
p4est
p7zip
pacbio-daligner
pacbio-damasker
pacbio-dazz-db
pacbio-dextractor
pagit
pagmo
paml
panda
pango
papi
paradiseo
parallel	Parallel fix sbangs (#5910)	2017-10-25 12:15:10 +02:00
parallel-netcdf
paraver
paraview	Customization of the Paraview module file to its nonstandard directory structure (#5799)	2017-10-26 11:12:04 +02:00
parmetis
parmgridgen
parsimonator
parsplice
partitionfinder
patch
patchelf
pathfinder
pax-utils
pbmpi
pcma
pcre
pcre2
pdsh
pdt
pegtl
pennant
perl	perl: add old version (#5844)	2017-10-20 16:18:24 -07:00
perl-algorithm-diff	adding perl-bio-perl and dependencies (#5845)	2017-10-25 13:35:17 +02:00
perl-b-hooks-endofscope	adding perl-moose and dependencies (#5912)	2017-10-25 12:07:20 +02:00
perl-bio-perl	adding perl-bio-perl and dependencies (#5845)	2017-10-25 13:35:17 +02:00
perl-capture-tiny
perl-class-data-inheritable	adding perl-bio-perl and dependencies (#5845)	2017-10-25 13:35:17 +02:00
perl-class-load	adding perl-moose and dependencies (#5912)	2017-10-25 12:07:20 +02:00
perl-class-load-xs	adding perl-moose and dependencies (#5912)	2017-10-25 12:07:20 +02:00
perl-cpan-meta-check	adding perl-moose and dependencies (#5912)	2017-10-25 12:07:20 +02:00
perl-data-optlist	adding perl-moose and dependencies (#5912)	2017-10-25 12:07:20 +02:00
perl-data-stag	adding perl-bio-perl and dependencies (#5845)	2017-10-25 13:35:17 +02:00
perl-dbfile
perl-dbi
perl-devel-cycle
perl-devel-globaldestruction	adding perl-moose and dependencies (#5912)	2017-10-25 12:07:20 +02:00
perl-devel-overloadinfo	adding perl-moose and dependencies (#5912)	2017-10-25 12:07:20 +02:00
perl-devel-stacktrace	adding perl-moose and dependencies (#5912)	2017-10-25 12:07:20 +02:00
perl-dist-checkconflicts	adding perl-moose and dependencies (#5912)	2017-10-25 12:07:20 +02:00
perl-eval-closure	adding perl-moose and dependencies (#5912)	2017-10-25 12:07:20 +02:00
perl-exception-class	adding perl-bio-perl and dependencies (#5845)	2017-10-25 13:35:17 +02:00
perl-extutils-makemaker
perl-extutils-pkgconfig
perl-file-pushd	adding perl-moose and dependencies (#5912)	2017-10-25 12:07:20 +02:00
perl-font-ttf
perl-gd
perl-gd-graph
perl-gd-text
perl-intervaltree
perl-io-string	adding perl-bio-perl and dependencies (#5845)	2017-10-25 13:35:17 +02:00
perl-math-cdf
perl-module-build
perl-module-runtime-conflicts	adding perl-moose and dependencies (#5912)	2017-10-25 12:07:20 +02:00
perl-moose	adding perl-moose and dependencies (#5912)	2017-10-25 12:07:20 +02:00
perl-mro-compat	adding perl-moose and dependencies (#5912)	2017-10-25 12:07:20 +02:00
perl-namespace-clean	adding perl-moose and dependencies (#5912)	2017-10-25 12:07:20 +02:00
perl-package-deprecationmanager	adding perl-moose and dependencies (#5912)	2017-10-25 12:07:20 +02:00
perl-package-stash	adding perl-moose and dependencies (#5912)	2017-10-25 12:07:20 +02:00
perl-package-stash-xs	adding perl-moose and dependencies (#5912)	2017-10-25 12:07:20 +02:00
perl-padwalker
perl-params-util	adding perl-moose and dependencies (#5912)	2017-10-25 12:07:20 +02:00
perl-pdf-api2
perl-star-fusion
perl-sub-exporter	adding perl-moose and dependencies (#5912)	2017-10-25 12:07:20 +02:00
perl-sub-exporter-progressive	adding perl-moose and dependencies (#5912)	2017-10-25 12:07:20 +02:00
perl-sub-identify	adding perl-moose and dependencies (#5912)	2017-10-25 12:07:20 +02:00
perl-sub-install	adding perl-moose and dependencies (#5912)	2017-10-25 12:07:20 +02:00
perl-sub-name	adding perl-moose and dependencies (#5912)	2017-10-25 12:07:20 +02:00
perl-sub-uplevel
perl-term-readkey
perl-test-cleannamespaces	adding perl-moose and dependencies (#5912)	2017-10-25 12:07:20 +02:00
perl-test-deep	adding perl-bio-perl and dependencies (#5845)	2017-10-25 13:35:17 +02:00
perl-test-differences	adding perl-bio-perl and dependencies (#5845)	2017-10-25 13:35:17 +02:00
perl-test-exception
perl-test-fatal	adding perl-moose and dependencies (#5912)	2017-10-25 12:07:20 +02:00
perl-test-memory-cycle
perl-test-most	adding perl-bio-perl and dependencies (#5845)	2017-10-25 13:35:17 +02:00
perl-test-needs	adding perl-moose and dependencies (#5912)	2017-10-25 12:07:20 +02:00
perl-test-requires	adding perl-moose and dependencies (#5912)	2017-10-25 12:07:20 +02:00
perl-test-warn	adding perl-bio-perl and dependencies (#5845)	2017-10-25 13:35:17 +02:00
perl-test-warnings	adding perl-moose and dependencies (#5912)	2017-10-25 12:07:20 +02:00
perl-text-diff	adding perl-bio-perl and dependencies (#5845)	2017-10-25 13:35:17 +02:00
perl-uri-escape
perl-xml-parser
petsc	slepc and petsc version updates (#5863)	2017-10-24 10:57:14 -07:00
pexsi
pfft
pflotran
pgdspider
pgi
phasta
phylip
picard
pidx
pigz
piranha
pixman
pkg-config
pkgconf
planck-likelihood
plasma	Fix bare 'except:' to placate errors in new flake8 version.	2017-10-24 10:05:36 +02:00
plink
plumed	plumed: reworked patching applications, added new version (#5680)	2017-10-10 12:35:53 -07:00
pmgr-collective
pmix
pnfft
pngwriter
poamsa
pocl	remove wildcards from make spack core and packages	2017-10-24 10:05:36 +02:00
polymake
porta
portage	portage: fixes + added v1.1.* (#5706)	2017-10-16 09:59:41 -07:00
postgresql
ppl
prank
presentproto
preseq
price
primer3
printproto
probconsrna
proj
protobuf
proxymngr
pruners-ninja
ps-lite	Add a package: dmlc/mxnet. (#3579)	2017-10-10 13:56:26 -07:00
psi4
pstreams
pugixml
pumi
pvm
py-3to2
py-4suite-xml
py-abipy
py-alabaster
py-apache-libcloud
py-apipkg
py-appdirs
py-appnope
py-apscheduler
py-argcomplete
py-argparse
py-ase
py-asn1crypto
py-astroid
py-astropy
py-attrs
py-autopep8
py-babel
py-backports-abc
py-backports-shutil-get-terminal-size
py-backports-ssl-match-hostname
py-basemap
py-beautifulsoup4
py-binwalk
py-biom-format
py-biopython
py-bleach
py-blessings
py-bokeh
py-boltons
py-bottleneck
py-brian
py-brian2
py-bsddb3
py-cclib
py-cdat-lite
py-cdo
py-certifi
py-cffi
py-chardet
py-click
py-colorama
py-colormath
py-configparser
py-counter
py-coverage
py-cpuinfo
py-cryptography
py-csvkit
py-current
py-cutadapt
py-cycler
py-cython
py-dask
py-dateutil
py-dbf
py-decorator
py-deeptools
py-dev
py-dill
py-docutils
py-doxypy
py-doxypypy
py-dryscrape
py-dxchange
py-dxfile
py-easybuild-easyblocks
py-easybuild-easyconfigs
py-easybuild-framework
py-edffile
py-elasticsearch
py-elephant
py-emcee
py-entrypoints
py-enum34
py-epydoc
py-espresso	py-espresso: initial commit (#5724)	2017-10-13 12:29:30 -07:00
py-espressopp	espressopp -> py-espressopp (#5732)	2017-10-13 12:28:36 -07:00
py-et-xmlfile
py-execnet
py-fastaindex
py-fasteners
py-faststructure
py-fiscalyear
py-flake8
py-flask
py-flexx
py-funcsigs
py-functools32
py-future
py-futures
py-genders
py-genshi
py-git2
py-git-review
py-gnuplot
py-griddataformats
py-guidata
py-guiqwt
py-h5py
py-html2text
py-html5lib
py-httpbin
py-hypothesis
py-idna
py-igraph
py-imagesize
py-iminuit
py-importlib
py-ipaddress
py-ipdb
py-ipykernel
py-ipython
py-ipython-genutils
py-ipywidgets
py-itsdangerous
py-jdcal
py-jedi
py-jinja2
py-joblib
py-jpype
py-jsonschema
py-junit-xml
py-jupyter-client
py-jupyter-console
py-jupyter-core
py-jupyter-notebook
py-keras
py-latexcodec
py-lazy
py-lazyarray
py-libconf
py-line-profiler
py-lit
py-lmfit
py-lockfile
py-logilab-common
py-lxml
py-lzstring
py-macholib
py-machotools
py-macs2
py-mako
py-mappy	minimap2: new package (#5722)	2017-10-12 10:07:42 -06:00
py-markdown
py-markupsafe
py-matplotlib
py-mccabe
py-mdanalysis
py-meep
py-memory-profiler
py-methylcode
py-misopy
py-mistune
py-mock
py-mongo
py-monotonic
py-monty
py-mpi4py	py-mpi4py: Add develop version and dependencies (#5798)	2017-10-18 15:56:48 -06:00
py-mpmath
py-multiprocess
py-multiqc
py-mx
py-mxnet	Add a package: dmlc/mxnet. (#3579)	2017-10-10 13:56:26 -07:00
py-myhdl
py-mysqldb1
py-nbconvert
py-nbformat
py-neo
py-nestle
py-netcdf4
py-netifaces
py-networkx
py-nose
py-nosexcover
py-numexpr
py-numpy
py-numpydoc
py-olefile
py-ont-fast5-api
py-openpyxl
py-ordereddict
py-oset
py-packaging
py-palettable
py-pandas
py-paramiko
py-pathlib2
py-pathos
py-pathspec
py-patsy
py-pbr
py-periodictable
py-petsc4py
py-pexpect
py-phonopy
py-pickleshare
py-pil
py-pillow
py-pip
py-pipits
py-pkgconfig
py-ply
py-pmw
py-pox
py-ppft
py-prettytable
py-proj
py-prompt-toolkit
py-protobuf
py-psutil
py-ptyprocess
py-pudb
py-py
py-py2bit
py-py2cairo
py-py2neo
py-py4j
py-pyasn1
py-pybigwig
py-pybind11
py-pybtex
py-pybtex-docutils
py-pychecker
py-pycodestyle
py-pycparser
py-pycrypto
py-pycurl
py-pydatalog
py-pydispatcher
py-pydot
py-pyelftools
py-pyfasta
py-pyfftw
py-pyflakes
py-pygments
py-pygobject
py-pygtk
py-pylint
py-pymatgen
py-pyminifier
py-pympler
py-pynn
py-pypar
py-pyparsing
py-pypeflow
py-pyprof2html
py-pyqt
py-pyrad
py-pysam
py-pyscaf
py-pyserial
py-pyside
py-pysocks
py-pytables
py-pytest
py-pytest-cov
py-pytest-flake8
py-pytest-httpbin
py-pytest-mock
py-pytest-runner
py-pytest-xdist
py-python-daemon
py-python-gitlab
py-pythonqwt
py-pytz
py-pywavelets
py-pyyaml
py-qtawesome
py-qtconsole
py-qtpy
py-quantities
py-radical-utils
py-ranger
py-readme-renderer
py-regex
py-requests
py-restview
py-rope
py-rpy2
py-rsa
py-rtree
py-saga-python
py-scientificpython
py-scikit-image
py-scikit-learn
py-scipy
py-seaborn
py-setuptools
py-sh
py-shiboken
py-simplegeneric
py-simplejson
py-singledispatch
py-sip
py-six
py-slepc4py
py-sncosmo
py-snowballstemmer
py-spectra
py-spefile
py-spglib
py-sphinx
py-sphinx-bootstrap-theme
py-sphinx-rtd-theme
py-sphinxcontrib-bibtex
py-sphinxcontrib-programoutput
py-sphinxcontrib-websupport
py-spyder
py-spykeutils
py-sqlalchemy
py-statsmodels
py-storm
py-subprocess32
py-symengine
py-symfit
py-sympy
py-tabulate
py-tappy
py-terminado
py-theano
py-tifffile
py-tomopy
py-tornado
py-tqdm
py-traitlets
py-tuiview
py-twisted
py-typing
py-tzlocal
py-unittest2
py-unittest2py3k
py-urllib3
py-urwid
py-vcversioner
py-virtualenv
py-vsc-base
py-vsc-install
py-wcsaxes
py-wcwidth
py-webkit-server
py-werkzeug
py-wheel
py-widgetsnbextension
py-wrapt
py-xarray
py-xlrd
py-xlsxwriter	py-xlsxwriter: new package (#5918)	2017-10-25 12:19:59 +02:00
py-xmlrunner
py-xopen
py-xpyb
py-xvfbwrapper
py-yapf
py-yt
py-zmq
python	Fix bare 'except:' to placate errors in new flake8 version.	2017-10-24 10:05:36 +02:00
qbank
qbox
qhull
qmcpack
qmd-progress
qrupdate
qt
qt-creator
qtgraph
qthreads
quinoa
qwt
r	remove wildcards from make spack core and packages	2017-10-24 10:05:36 +02:00
r-a4	bioconductor update (#5786)	2017-10-24 11:19:19 +02:00
r-a4base	bioconductor update (#5786)	2017-10-24 11:19:19 +02:00
r-a4classif	bioconductor update (#5786)	2017-10-24 11:19:19 +02:00
r-a4core	bioconductor update (#5786)	2017-10-24 11:19:19 +02:00
r-a4preproc	bioconductor update (#5786)	2017-10-24 11:19:19 +02:00
r-a4reporting	bioconductor update (#5786)	2017-10-24 11:19:19 +02:00
r-abadata
r-abaenrichment	bioconductor update (#5786)	2017-10-24 11:19:19 +02:00
r-abind
r-absseq	bioconductor update (#5786)	2017-10-24 11:19:19 +02:00
r-acde
r-acepack	r-acepack: Create new package. (#5884)	2017-10-24 11:26:37 +02:00
r-acgh	bioconductor update (#5786)	2017-10-24 11:19:19 +02:00
r-acme	bioconductor update (#5786)	2017-10-24 11:19:19 +02:00
r-ada
r-adabag
r-ade4
r-adegenet
r-adsplit	bioconductor update (#5786)	2017-10-24 11:19:19 +02:00
r-affxparser	bioconductor update (#5786)	2017-10-24 11:19:19 +02:00
r-affy	r-affy: added versioned dependency on r (#5660)	2017-10-11 19:49:48 -06:00
r-affycomp	bioconductor update (#5786)	2017-10-24 11:19:19 +02:00
r-affycompatible	bioconductor update (#5786)	2017-10-24 11:19:19 +02:00
r-affycontam	bioconductor update (#5786)	2017-10-24 11:19:19 +02:00
r-affydata	r-affydata: Create new package. (#5665)	2017-10-09 17:05:21 -06:00
r-affyexpress	r-affyexpress: Create new package. (#5807)	2017-10-18 19:07:04 -06:00
r-affyilm	r-affyilm: Create new package. (#5810)	2017-10-18 19:06:16 -06:00
r-affyio	r-affyio: added versioned dependency on r (#5661)	2017-10-11 19:49:28 -06:00
r-affypdnn	r-affypdnn: Create new package. (#5826)	2017-10-24 11:12:47 +02:00
r-affyplm	r-affyplm: Create new package. (#5827)	2017-10-24 11:12:56 +02:00
r-affyqcreport	r-affyqcreport: Create new package. (#5829)	2017-10-24 11:13:44 +02:00
r-affyrnadegradation	r-affyrnadegradation: Create new package. (#5830)	2017-10-24 11:13:53 +02:00
r-agdex	r-agdex: Create new package. (#5983)	2017-10-27 08:16:04 +02:00
r-agilp	r-agilp: Create new package. (#5984)	2017-10-27 08:15:39 +02:00
r-aims	r-aims: Create new package. (#5987)	2017-10-27 08:14:55 +02:00
r-aldex2	r-aldex2: Create new package. (#6015)	2017-10-28 12:10:22 -06:00
r-alpine	r-alpine: Create new package. (#6037)	2017-10-30 22:40:25 -06:00
r-als	r-als: Create new package. (#6059)	2017-10-31 16:17:21 -06:00
r-annaffy	bioconductor update (#5786)	2017-10-24 11:19:19 +02:00
r-annotate	bioconductor update (#5786)	2017-10-24 11:19:19 +02:00
r-annotationdbi	bioconductor update (#5786)	2017-10-24 11:19:19 +02:00
r-annotationfilter	r-annotationfilter: created new package (#5995)	2017-10-27 08:09:31 +02:00
r-annotationforge	r-annotationforge: Create new package. (#5968)	2017-10-27 08:25:12 +02:00
r-annotationhub	r-annotationhub: created new package (#5972)	2017-10-27 08:23:25 +02:00
r-ape
r-assertthat
r-backports	r-backports: Create new package. (#6040)	2017-10-30 22:38:35 -06:00
r-base64	r-base64: created new package (#5850)	2017-10-24 11:21:48 +02:00
r-base64enc
r-beanplot	r-beanplot: created new package (#5825)	2017-10-24 11:12:15 +02:00
r-bh
r-biobase
r-biocgenerics	r-biocgenerics: added version 0.22.1 and added versioned dependency on r (#5683)	2017-10-11 19:48:19 -06:00
r-biocinstaller	r-biocinstaller: added versioned dependency on r (#5663)	2017-10-11 19:49:08 -06:00
r-biocparallel	r-biocparallel: created new package (#5703)	2017-10-11 19:42:25 -06:00
r-biomart	r-biomart: added versioned dependency on r (#5666)	2017-10-11 19:41:08 -06:00
r-biostrings	r-biostrings: added versioned dependency on r (#5667)	2017-10-13 07:51:30 -06:00
r-biovizbase	r-biovizbase: Create new package. (#6042)	2017-10-30 22:38:10 -06:00
r-bit
r-bit64
r-bitops
r-blob
r-boot
r-brew
r-bsgenome	r-bsgenome: created new package (#5928)	2017-10-25 11:16:53 +02:00
r-bumphunter	r-bumphunter: new package (#5824)	2017-10-24 11:09:38 +02:00
r-c50
r-car
r-caret
r-category	r-category: Create new package. (#5959)	2017-10-27 08:34:16 +02:00
r-catools
r-checkmate	r-checkmate: Create new package. (#5880)	2017-10-24 11:25:24 +02:00
r-checkpoint
r-chron
r-class
r-cluster
r-coda
r-codetools
r-coin
r-colorspace
r-corpcor
r-corrplot
r-crayon	r-crayon: Update version to 1.3.4 (#5854)	2017-10-24 11:23:00 +02:00
r-cubature
r-cubist
r-curl	r-curl: added list_url and version 3.0 (#5874)	2017-10-24 11:23:54 +02:00
r-data-table	r-data-table: added list_url and version 1.10.4-2 (#5888)	2017-10-24 11:29:42 +02:00
r-dbi
r-delayedarray	r-delayedarray: created new package (#5704)	2017-10-11 19:42:04 -06:00
r-deldir
r-dendextend
r-deoptim
r-deoptimr
r-deseq2	r-deseq2: Create new package. (#5981)	2017-10-27 08:16:40 +02:00
r-desolve	r-geiger and dependencies (#5933)	2017-10-25 11:17:37 +02:00
r-devtools
r-diagrammer
r-dichromat
r-digest
r-diptest
r-domc
r-doparallel	r-doparallel: added list_url and version 1.0.11 (#5920)	2017-10-25 11:15:49 +02:00
r-dorng	r-dorng: created new package (#5740)	2017-10-13 07:47:01 -06:00
r-downloader
r-dplyr
r-dt
r-dygraphs
r-e1071	r-e1071: Add list_url. (#5986)	2017-10-28 12:12:52 -06:00
r-edger	r-edger: added versioned dependency on r (#5669)	2017-10-13 18:32:43 -06:00
r-ellipse
r-ensembldb	r-ensembldb: created new package (#6038)	2017-10-30 22:39:54 -06:00
r-ergm
r-evaluate	r-evaluate: Update version to 0.10.1. (#5847)	2017-10-24 11:20:47 +02:00
r-expm
r-factoextra
r-factominer
r-filehash
r-flashclust
r-flexmix
r-foreach
r-foreign
r-formatr	r-formatr: Update version to 1.5 (#5855)	2017-10-24 11:23:17 +02:00
r-formula	r-formula: Update version to 1.2-2 (#5923)	2017-10-25 11:16:34 +02:00
r-fpc
r-futile-logger	r-futile-logger: created new package (#5701)	2017-10-11 19:43:15 -06:00
r-futile-options	r-futile-options: created new package (#5699)	2017-10-11 19:43:53 -06:00
r-gbm
r-gcrma	r-gcrma: added versioned dependency on r (#5670)	2017-10-12 16:18:30 -06:00
r-gdata
r-geiger	r-geiger and dependencies (#5933)	2017-10-25 11:17:37 +02:00
r-genefilter	bioconductor update (#5786)	2017-10-24 11:19:19 +02:00
r-geneplotter	r-geneplotter: Create new package. (#5924)	2017-10-25 12:01:19 +02:00
r-genomeinfodb	r-genomeinfodb: created new package (#5695)	2017-10-11 19:47:03 -06:00
r-genomeinfodbdata	r-genomeinfodbdata: added versioned dependency on r (#5685)	2017-10-11 19:48:00 -06:00
r-genomicalignments	r-genomicalignments: created new package (#5785)	2017-10-24 11:30:33 +02:00
r-genomicfeatures	r-genomicfeatures: new package (#5811)	2017-10-18 19:05:53 -06:00
r-genomicranges	r-genomicranges: added new package (#5697)	2017-10-11 19:45:03 -06:00
r-geomorph	r-geomorph and other r fixes (#5961)	2017-10-28 12:13:38 -06:00
r-geoquery	r-geoquery: created new package (#5879)	2017-10-24 11:25:02 +02:00
r-geosphere
r-ggally	r-ggally: new package (#6036)	2017-10-30 22:41:12 -06:00
r-ggbio	r-ggbio: new package (#6058)	2017-10-31 16:17:07 -06:00
r-ggmap
r-ggplot2	r-ggplot2: dependecy r-scales version should be 0.4.1: (#6031)	2017-10-30 22:42:31 -06:00
r-ggpubr
r-ggrepel
r-ggsci
r-ggvis
r-gistr
r-git2r
r-glmnet
r-gmodels
r-gmp
r-go-db
r-googlevis
r-gostats	r-gostats: Create new package. (#5969)	2017-10-27 08:24:49 +02:00
r-gplots
r-graph	r-graph: Create new package. (#5958)	2017-10-27 08:34:33 +02:00
r-gridbase
r-gridextra	r-gridextra: Update version to 2.3 (#5915)	2017-10-25 11:50:16 +02:00
r-gseabase	r-gseabase: Create new package. (#5930)	2017-10-25 11:17:00 +02:00
r-gtable
r-gtools
r-gviz	r-gviz: Create new package. (#6043)	2017-10-31 15:06:30 -06:00
r-hexbin
r-highr
r-hmisc	r-hmisc: Create new package. (#5919)	2017-10-25 11:15:40 +02:00
r-hms	r-hms: created new package (#5638)	2017-10-06 20:12:59 -06:00
r-htmltable	r-htmltable: Create new package. (#5882)	2017-10-24 11:25:58 +02:00
r-htmltools
r-htmlwidgets	r-htmlwidgets: Update verion to 0.9 (#5881)	2017-10-24 11:25:42 +02:00
r-httpuv
r-httr	r-httr: added list_url and version 1.3.1 (#5877)	2017-10-24 11:24:29 +02:00
r-hwriter
r-igraph
r-illuminaio	r-illuminaio: created new package (#5849)	2017-10-24 11:21:31 +02:00
r-influencer
r-inline
r-interactivedisplaybase	r-interactivedisplaybase: created new package (#5967)	2017-10-27 08:26:02 +02:00
r-ipred
r-iranges	r-iranges: changed url to git and added versioned dependency on r (#5971)	2017-10-28 12:14:33 -06:00
r-irdisplay
r-irkernel
r-irlba
r-iso	r-iso: Create new package. (#6061)	2017-10-31 16:17:53 -06:00
r-iterators
r-jpeg
r-jsonlite
r-kegg-db
r-kernlab
r-kernsmooth
r-kknn
r-knitr	r-knitr: Update version to 1.17. (#5878)	2017-10-24 11:24:45 +02:00
r-labeling
r-lambda-r	r-lambda-r: created new package (#5700)	2017-10-11 19:43:33 -06:00
r-laplacesdemon
r-lattice
r-latticeextra	r-latticeextra: Create new package. (#5883)	2017-10-24 11:26:20 +02:00
r-lava
r-lazyeval
r-leaflet
r-leaps
r-learnbayes
r-limma	bioconductor update (#5786)	2017-10-24 11:19:19 +02:00
r-lme4
r-lmtest
r-locfit
r-lpsolve
r-lsei	r-lsei: new package (#5926)	2017-10-25 11:16:46 +02:00
r-lubridate
r-magic
r-magrittr
r-mapproj
r-maps
r-maptools
r-markdown	r-markdown: Update version to 0.8. (#5851)	2017-10-24 11:22:05 +02:00
r-mass	r-mass: Update version to 7.3-47 (#5885)	2017-10-24 11:27:04 +02:00
r-matrix
r-matrixmodels
r-matrixstats	r-matrixstats: created new package (#5682)	2017-10-11 19:48:39 -06:00
r-mclust
r-mcmcglmm	r-mcmcglmm: new package (#5970)	2017-10-27 08:24:28 +02:00
r-mda
r-memoise
r-methodss3	r-methodss3: Create new package. (#5960)	2017-10-27 08:32:20 +02:00
r-mgcv
r-mime
r-minfi	r-minfi: created new package (#5887)	2017-10-24 14:07:45 +02:00
r-minqa
r-mlbench
r-mlinterfaces	bioconductor update (#5786)	2017-10-24 11:19:19 +02:00
r-modelmetrics
r-modeltools
r-mpm
r-multcomp
r-multtest	bioconductor update (#5786)	2017-10-24 11:19:19 +02:00
r-munsell
r-mvtnorm
r-ncbit	r-geiger and dependencies (#5933)	2017-10-25 11:17:37 +02:00
r-ncdf4
r-network
r-networkd3
r-nlme	r-nlme: added list_url and version 3.1-131 (#5890)	2017-10-24 11:30:49 +02:00
r-nloptr
r-nmf
r-nnet
r-nnls	r-nnls: Create new package. (#6060)	2017-10-31 16:17:36 -06:00
r-nor1mix	r-nor1mix: created new package (#5828)	2017-10-24 11:13:04 +02:00
r-np
r-numderiv
r-oligoclasses	r-oligoclasses: Create new package. (#5966)	2017-10-27 08:26:25 +02:00
r-oo	r-oo: Create new package. (#5962)	2017-10-27 08:31:46 +02:00
r-openssl	r-openssl: changed homepage url to the CRAN package homepage, added list_url and added version 0.9.7 (#5848)	2017-10-25 11:12:31 +02:00
r-organismdbi	r-organismdbi: new package (#5997)	2017-10-28 12:11:44 -06:00
r-packrat
r-pacman
r-pamr
r-party
r-partykit
r-pbdzmq
r-pbkrtest
r-pcamethods	r-pcamethods: created new package (#6041)	2017-10-30 22:39:29 -06:00
r-permute
r-pfam-db	r-pfam-db: Create new package. (#5965)	2017-10-27 08:27:19 +02:00
r-pkgconfig
r-pkgmaker
r-plogr
r-plotrix
r-pls
r-plyr
r-png
r-prabclus
r-praise
r-preprocesscore	r-preprocesscore: added versioned dependency on r (#5671)	2017-10-13 18:50:26 -06:00
r-prettyunits	r-prettyunits: created new package (#6033)	2017-10-30 22:43:20 -06:00
r-prodlim
r-progress	r-progress: new package (#6034)	2017-10-30 22:43:57 -06:00
r-protgenerics	r-protgenerics: created new package (#5998)	2017-10-27 08:08:16 +02:00
r-proto
r-proxy	r-proxy: created new package (#6039)	2017-10-30 22:39:05 -06:00
r-pryr
r-ptw	r-ptw: Create new package. (#6062)	2017-10-31 18:29:45 -06:00
r-quadprog
r-quantmod
r-quantreg
r-quantro	r-quantro: created new package (#5922)	2017-10-25 11:16:20 +02:00
r-r6
r-randomforest
r-raster
r-rbgl	r-rbgl: Create new package. (#5931)	2017-10-25 11:17:29 +02:00
r-rbokeh
r-rcolorbrewer
r-rcpp
r-rcpparmadillo	r-rcpparmadillo: Create new package. (#5875)	2017-10-24 11:24:16 +02:00
r-rcppeigen
r-rcurl
r-rda
r-readr	r-readr: created new package (#5741)	2017-10-13 07:47:43 -06:00
r-registry
r-repr
r-reshape	r-reshape: created new package (#5889)	2017-10-24 11:29:56 +02:00
r-reshape2
r-rgl	r-geomorph and other r fixes (#5961)	2017-10-28 12:13:38 -06:00
r-rgooglemaps
r-rinside
r-rjava
r-rjson
r-rjsonio
r-rlang	r-adsplit: Create new package and update version for its dependencies. (#5640)	2017-10-09 17:10:29 -06:00
r-rmarkdown
r-rminer
r-rmpfr
r-rmpi	r-rmpi: added list_url and updated md5 (#5698)	2017-10-13 18:35:06 -06:00
r-rmysql
r-rngtools
r-robustbase
r-rocr
r-rodbc
r-roxygen2
r-rpart
r-rpart-plot
r-rpostgresql
r-rsamtools	r-rsamtools: created new package (#5702)	2017-10-11 19:42:55 -06:00
r-rsnns
r-rsqlite
r-rstan
r-rstudioapi
r-rtracklayer	r-rtracklayer: new package (#5808)	2017-10-18 19:06:36 -06:00
r-rzmq
r-s4vectors	r-s4vectors: added versioned dependency on r (#5672)	2017-10-13 18:32:17 -06:00
r-sandwich
r-scales	r-scales: added dependencies and version 0.5.0. (#6030)	2017-10-30 22:42:05 -06:00
r-scatterplot3d
r-segmented	r-segmented: Update version to 0.5-2.2 (#6029)	2017-10-30 22:41:32 -06:00
r-seqinr	r-seqinr: Update version to 3.4-5 (#6032)	2017-10-30 22:42:51 -06:00
r-sfsmisc
r-shiny	r-geomorph and other r fixes (#5961)	2017-10-28 12:13:38 -06:00
r-siggenes	r-siggenes: new package (#5831)	2017-10-24 11:14:04 +02:00
r-simpleaffy	r-simpleaffy: added versioned dependency on r (#5673)	2017-10-12 16:18:15 -06:00
r-snow
r-sourcetools	r-sourcetools: Create new package. (#5853)	2017-10-24 11:22:42 +02:00
r-sp
r-sparsem
r-spdep
r-speedglm	r-speedglm: Create new package. (#6035)	2017-10-30 22:40:48 -06:00
r-stanheaders
r-statnet-common
r-stringi	r-stringi: added list_url and version 1.1.5 and 1.1.3 (#5737)	2017-10-13 07:45:26 -06:00
r-stringr	r-stringr: added list_url and version 1.2.0 (#5738)	2017-10-13 07:46:29 -06:00
r-strucchange
r-subplex	r-geiger and dependencies (#5933)	2017-10-25 11:17:37 +02:00
r-summarizedexperiment	r-summarizedexperiment: created new package (#5734)	2017-10-13 07:45:05 -06:00
r-survey
r-survival
r-tarifx
r-tensora	r-mcmcglmm: new package (#5970)	2017-10-27 08:24:28 +02:00
r-testit	r-testit: Update version to 0.7 (#5852)	2017-10-24 11:22:23 +02:00
r-testthat
r-th-data
r-threejs
r-tibble
r-tidyr
r-trimcluster
r-trust
r-ttr
r-utils	r-utils: Create new package. (#5964)	2017-10-27 08:31:26 +02:00
r-uuid
r-variantannotation	r-variantannotation: created new package (#5932)	2017-10-25 11:17:15 +02:00
r-varselrf
r-vcd
r-vegan
r-viridis
r-viridislite
r-visnetwork
r-whisker
r-withr
r-xgboost
r-xlconnect
r-xlconnectjars
r-xlsx
r-xlsxjars
r-xml
r-xtable
r-xts
r-xvector	r-xvector: added versioned dependency on r (#5731)	2017-10-13 16:01:18 -06:00
r-yaml	r-yaml: Update version to 2.1.14 (#5856)	2017-10-24 11:23:38 +02:00
r-yaqcaffy	r-yaqcaffy: added list_url and versioned dependency on r (#5730)	2017-10-13 07:44:26 -06:00
r-yarn	r-yarn: created new package (#5925)	2017-10-25 11:16:41 +02:00
r-zlibbioc	r-zlibbioc: added versioned dependency on r (#5674)	2017-10-13 07:50:10 -06:00
r-zoo
raft
raja	Fix spack build for RAJA: master requires submodules (#6052)	2017-10-31 15:08:32 -06:00
randfold
random123
randrproto
ravel
raxml
ray
rdp-classifier
readline
recordproto
redundans
relion
rempi
rename
rendercheck
renderproto
resourceproto
revbayes
rgb
rhash
rockstar
root
rose
rr
rsbench
rsem
rstart
rsync
rtags
rtax
ruby
rust
rust-bindgen
sabre
salmon
sambamba
samrai
samtools	samtools: add version 1.6 + some fixes (#5715)	2017-10-12 10:08:31 -06:00
sandbox
sas
satsuma2
savanna
saws
sbt
scala
scalasca
scalpel	Add package for scalpel@0.5.3 (#5901)	2017-10-25 13:48:11 +02:00
scons
scorec-core
scorep
scotch
scr
screen
scripts
scrnsaverproto
sctk
sdl2
sdl2-image
sed
seqprep
seqtk
serf
sessreg
setxkbmap
sga
shapeit
shared-mime-info
shiny-server
shortstack
showfont
sickle
signalp
silo
simplemoc
simul
simulationio
singularity	singularity 2.4 added (#5782)	2017-10-17 01:28:19 -07:00
slepc	slepc and petsc version updates (#5863)	2017-10-24 10:57:14 -07:00
slurm
smalt
smc	add newlines at end of some package files	2017-10-24 10:05:36 +02:00
smproxy
snakemake
snap
snap-berkeley
snap-korf	snap-korf: new package (#5589)	2017-10-10 11:09:31 -07:00
snappy
snbone
sniffles
snptest
soap2
soapindel
soapsnp
somatic-sniper
sortmerna
sowing
sox
spades
spark
sparsehash
sparta
spdlog
spectrum-mpi
speex
sph2pipe
spherepack
spindle
spot
sqlite
squid
sra-toolkit
sspace-longread
sspace-standard
sst-dumpi
sst-macro
stacks
staden-io-lib
star
star-ccm-plus
stat
stc
stream
strelka	Strelka depends on boost 1.56.0 *or newer* (#5690)	2017-10-11 17:21:26 -06:00
stress
stringtie
structure
sublime-text
subread
subversion
suite-sparse
sumaclust
sundials	sundials: update to v3.0.0 (#6004)	2017-10-30 22:49:13 -06:00
superlu
superlu-dist	superlu_dist: update to v5.2.2 (#6024)	2017-10-30 22:46:41 -06:00
superlu-mt
sw4lite	sw4lite: Added -lgfortran and set to serial build (#6055)	2017-10-31 14:29:06 -06:00
swarm
swfft	Added fftw dependency (#6057)	2017-10-31 14:33:01 -06:00
swiftsim
swig
symengine
sympol
sz
tabix
talloc
tar
targetp
task
taskd
tassel
tau
tcl
tcoffee
tcsh
tealeaf
tetgen
tethex
texinfo
texlive
the-platinum-searcher
the-silver-searcher
thrift
thrust	Add a package: thrust. (#3729)	2017-10-24 11:39:38 +02:00
tig
tinyxml
tinyxml2
tk
tmalign
tmhmm
tmux
tmuxinator
tophat
tppred
transabyss
transdecoder
transposome
transset
trapproto
tree
triangle
trilinos	Merging netcdf dependency lines in trilinos into one line for better coverage. (#5990)	2017-10-30 22:48:21 -06:00
trimgalore
trimmomatic
turbine
turbomole
tut
twm
tycho2
uberftp
udunits2
uncrustify
unibilium
unison
units
unixodbc
usearch
util-linux
util-macros
uuid
valgrind
vampirtrace
vardictjava
varscan
vc
vcftools
vcsh
vdt
vecgeom
veclibfort
vegas2
velvet
videoproto
viennarna
viewres
vim
virtualgl
visit
vizglow
vmatch
voropp
votca-csg
votca-ctp
votca-moo
votca-tools
votca-xtp	votca-xtp: added url (#5772)	2017-10-17 01:39:02 -07:00
vpfft
vpic
vsearch
vtk
wannier90
wget
windowswmproto
wt
wx
wxpropgrid
x11perf
xapian-core
xauth
xbacklight
xbiff
xbitmaps
xcalc
xcb-demo
xcb-proto
xcb-util
xcb-util-cursor
xcb-util-errors
xcb-util-image
xcb-util-keysyms
xcb-util-renderutil
xcb-util-wm
xclipboard
xclock
xcmiscproto
xcmsdb
xcompmgr
xconsole
xcursor-themes
xcursorgen
xdbedizzy
xditview
xdm
xdpyinfo
xdriinfo
xedit
xerces-c
xev
xextproto
xeyes
xf86bigfontproto
xf86dga
xf86dgaproto
xf86driproto
xf86miscproto
xf86rushproto
xf86vidmodeproto
xfd
xfindproxy
xfontsel
xfs
xfsinfo
xfwp
xgamma
xgc
xhost
xineramaproto
xinit
xinput
xkbcomp
xkbdata
xkbevd
xkbprint
xkbutils
xkeyboard-config
xkill
xload
xlogo
xlsatoms
xlsclients
xlsfonts
xmag
xman
xmessage
xmh
xmlto
xmodmap
xmore
xorg-cf-files
xorg-docs
xorg-gtest
xorg-server
xorg-sgml-doctools
xphelloworld
xplor-nih
xplsprinters
xpr
xprehashprinterlist
xprop
xproto
xproxymanagementprotocol
xqilla
xrandr
xrdb
xrefresh
xrootd
xrx
xsbench	xsbench: add v14 (#5835)	2017-10-20 08:52:17 +02:00
xscope
xsdk
xsdktrilinos
xset
xsetmode
xsetpointer
xsetroot
xsm
xstdcmap
xterm
xtrans
xtrap
xts
xvidtune
xvinfo
xwd
xwininfo
xwud
xz
yajl
yaml-cpp
yasm
yorick
z3
zeromq
zfp
zip
zlib	Zlib gets a 50-60% performance win when compiled with -O2 (#5838)	2017-10-25 13:53:35 +02:00
zoltan
zsh
zstd