66 lines
2.4 KiB
Python
66 lines
2.4 KiB
Python
##############################################################################
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# Copyright (c) 2013-2018, Lawrence Livermore National Security, LLC.
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# Produced at the Lawrence Livermore National Laboratory.
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#
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# This file is part of Spack.
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# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
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# LLNL-CODE-647188
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#
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# For details, see https://github.com/llnl/spack
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# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
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#
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# This program is free software; you can redistribute it and/or modify
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# it under the terms of the GNU Lesser General Public License (as
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# published by the Free Software Foundation) version 2.1, February 1999.
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#
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# This program is distributed in the hope that it will be useful, but
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# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
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# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
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# conditions of the GNU Lesser General Public License for more details.
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#
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# You should have received a copy of the GNU Lesser General Public
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# License along with this program; if not, write to the Free Software
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# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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##############################################################################
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from spack import *
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class NcbiToolkit(AutotoolsPackage):
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"""NCBI C++ Toolkit"""
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homepage = "https://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/"
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url = "ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools++/CURRENT/ncbi_cxx--21_0_0.tar.gz"
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version('21_0_0', '14e021e08b1a78ac9cde98d0cab92098')
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depends_on('boost@1.35.0:')
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depends_on('bzip2')
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depends_on('libjpeg')
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depends_on('libpng')
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depends_on('libtiff')
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depends_on('libxml2')
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depends_on('libxslt@1.1.14:')
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depends_on('lzo')
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depends_on('pcre')
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depends_on('giflib')
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depends_on('sqlite@3.6.6:')
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depends_on('zlib')
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depends_on('samtools')
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depends_on('bamtools')
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def configure_args(self):
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return ['--without-sybase', '--without-fastcgi']
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def patch(self):
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with working_dir(join_path('src', 'util', 'image')):
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filter_file(r'jpeg_start_compress(&cinfo, true)',
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'jpeg_start_compress(&cinfo, TRUE)',
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'image_io_jpeg.cpp', string=True)
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def build(self, spec, prefix):
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compiler_version = self.compiler.version.joined
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with working_dir(join_path(
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'GCC{0}-DebugMT64'.format(compiler_version), 'build')):
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make('all_r')
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