27 lines
971 B
Python
27 lines
971 B
Python
# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack.package import *
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class PacbioDaligner(MakefilePackage):
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"""Daligner: The Dazzler "Overlap" Module. This is a special fork
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required for some pacbio utilities."""
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homepage = "https://github.com/PacificBiosciences/DALIGNER"
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git = "https://github.com/PacificBiosciences/DALIGNER.git"
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version("2017-08-05", commit="0fe5240d2cc6b55bf9e04465b700b76110749c9d")
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depends_on("gmake", type="build")
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depends_on("pacbio-dazz-db")
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def edit(self, spec, prefix):
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mkdir(prefix.bin)
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makefile = FileFilter("Makefile")
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makefile.filter(r"DEST_DIR\s*=\s*~/bin", "DEST_DIR = " + prefix.bin)
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gmf = FileFilter("GNUmakefile")
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gmf.filter(r"rsync\s*-av\s*\$\{ALL\}\s*\$\{PREFIX\}/bin", "cp ${ALL} " + prefix.bin)
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