d1e01d5646
* khmer: new package @2.1.1 * rationalising patch * adding dep, modifying patch * Update var/spack/repos/builtin/packages/khmer/package.py Indeed! Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update package.py --------- Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
33 lines
1.1 KiB
Python
33 lines
1.1 KiB
Python
# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack.package import *
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class Khmer(PythonPackage):
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"""khmer is a software library and toolkit for k-mer based analysis and transformation
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of nucleotide sequence data"""
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homepage = "https://khmer.readthedocs.io/en/latest/"
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pypi = "khmer/khmer-2.1.1.tar.gz"
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license("BSD-3-Clause", checked_by="A-N-Other")
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version("2.1.1", sha256="a709606910bb8679bd8525e9d2bf6d1421996272e343b54cc18090feb2fdbe24")
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# https://github.com/dib-lab/khmer/pull/1922 ...
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conflicts("^python@3.12:")
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depends_on("py-setuptools@3.4.1:", type="build")
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depends_on("py-pytest-runner@2", type="build")
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depends_on("py-screed@1:", type=("build", "run"))
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# abandoned `bz2file` dependency dropped in favour of the patch below
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depends_on("openmpi")
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def patch(self):
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filter_file("bz2file", "bz2", join_path("khmer", "kfile.py"))
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filter_file("'bz2file', ", "", "setup.py")
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