3fc8203b93
* if the path to htslib is not specified the bundled one is built instead * additionally this fixes the build with the intel compiler
41 lines
1.5 KiB
Python
41 lines
1.5 KiB
Python
# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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class Bcftools(AutotoolsPackage):
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"""BCFtools is a set of utilities that manipulate variant calls in the
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Variant Call Format (VCF) and its binary counterpart BCF. All
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commands work transparently with both VCFs and BCFs, both
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uncompressed and BGZF-compressed."""
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homepage = "http://samtools.github.io/bcftools/"
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url = "https://github.com/samtools/bcftools/releases/download/1.3.1/bcftools-1.3.1.tar.bz2"
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version('1.9', sha256='6f36d0e6f16ec4acf88649fb1565d443acf0ba40f25a9afd87f14d14d13070c8')
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version('1.8', 'ba6c2fb7eb6dcb208f00ab8b22df475c')
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version('1.7', 'c972db68d17af9da3a18963f4e5aeca8')
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version('1.6', 'c4dba1e8cb55db0f94b4c47724b4f9fa')
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version('1.4', '50ccf0a073bd70e99cdb3c8be830416e')
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version('1.3.1', '575001e9fca37cab0c7a7287ad4b1cdb')
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version('1.2', '8044bed8fce62f7072fc6835420f0906')
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depends_on('libzip', when='@1.8:')
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depends_on('htslib@1.9', when='@1.9')
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depends_on('htslib@1.8', when='@1.8')
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depends_on('htslib@1.7', when='@1.7')
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depends_on('htslib@1.6', when='@1.6')
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depends_on('htslib@1.4', when='@1.4')
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depends_on('htslib@1.3.1', when='@1.3.1')
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depends_on('htslib@1.2', when='@1.2')
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def configure_args(self):
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args = []
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args.append('--with-htslib={0}'.format(self.spec['htslib'].prefix))
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return args
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