31 lines
1.1 KiB
Python
31 lines
1.1 KiB
Python
# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack.package import *
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class PacbioDextractor(MakefilePackage):
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"""The Dextractor and Compression Command Library. This is a special
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fork required by some pacbio utilities."""
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homepage = "https://github.com/PacificBiosciences/DEXTRACTOR"
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git = "https://github.com/PacificBiosciences/DEXTRACTOR.git"
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version("2016-08-09", commit="89726800346d0bed15d98dcc577f4c7733aab4b1")
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depends_on("hdf5")
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depends_on("gmake", type="build")
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def edit(self, spec, prefix):
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mkdirp(prefix.bin)
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makefile = FileFilter("Makefile")
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makefile.filter(
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r"PATH_HDF5\s*=\s*/sw/apps/hdf5/current", "PATH_HDF5 = " + spec["hdf5"].prefix
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)
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makefile.filter(r"PATH_HDF5\*s=\s*/usr/local/hdf5", "")
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makefile.filter(r"DEST_DIR\s*=\s*~/bin", "DEST_DIR = " + prefix.bin)
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gmf = FileFilter("GNUmakefile")
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gmf.filter(r"rsync\s*-av\s*\$\{ALL\}\s*\$\{PREFIX\}/bin", "cp ${ALL} " + prefix.bin)
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