d354289b9c
* allpathslg: adding package. compiler specs iffy, will fix * allpaths-lg: adding new package * allpaths-lg: fixing conflicts
46 lines
1.9 KiB
Python
46 lines
1.9 KiB
Python
##############################################################################
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# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
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# Produced at the Lawrence Livermore National Laboratory.
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#
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# This file is part of Spack.
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# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
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# LLNL-CODE-647188
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#
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# For details, see https://github.com/llnl/spack
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# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
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#
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# This program is free software; you can redistribute it and/or modify
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# it under the terms of the GNU Lesser General Public License (as
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# published by the Free Software Foundation) version 2.1, February 1999.
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#
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# This program is distributed in the hope that it will be useful, but
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# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
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# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
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# conditions of the GNU Lesser General Public License for more details.
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#
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# You should have received a copy of the GNU Lesser General Public
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# License along with this program; if not, write to the Free Software
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# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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##############################################################################
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from spack import *
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class AllpathsLg(AutotoolsPackage):
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"""ALLPATHS-LG is our original short read assembler and it works on both
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small and large (mammalian size) genomes."""
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homepage = "http://www.broadinstitute.org/software/allpaths-lg/blog/"
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url = "ftp://ftp.broadinstitute.org/pub/crd/ALLPATHS/Release-LG/latest_source_code/LATEST_VERSION.tar.gz"
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version('52488', 'bde9008e236d87708a48eb83af6d6d5b')
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# compiles with gcc 4.7.0 to 4.9.4)
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conflicts('%gcc@:4.6.4,5.1.0:')
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conflicts('%cce')
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conflicts('%clang')
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conflicts('%intel')
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conflicts('%nag')
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conflicts('%pgi')
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conflicts('%xl')
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conflicts('%xl_r')
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