41 lines
1.3 KiB
Python
41 lines
1.3 KiB
Python
# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack.package import *
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class BioconductorTximeta(RPackage):
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"""Transcript Quantification Import with Automatic Metadata
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Transcript quantification import from Salmon and alevin with automatic
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attachment of transcript ranges and release information, and other associated
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metadata. De novo transcriptomes can be linked to the appropriate sources with
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linkedTxomes and shared for computational reproducibility."""
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bioc = "tximeta"
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version(
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"1.18.1",
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sha256="ee486fc4b2352e2998a3c0c2064449ebcf09b5815f982597ea58311dc8064408",
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deprecated=True,
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)
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depends_on("r", type=("build", "run"))
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depends_on("r-annotationdbi")
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depends_on("r-annotationhub")
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depends_on("r-biocfilecache")
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depends_on("r-biostrings")
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depends_on("r-ensembldb")
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depends_on("r-genomeinfodb")
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depends_on("r-genomicfeatures")
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depends_on("r-genomicranges")
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depends_on("r-iranges")
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depends_on("r-s4vectors")
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depends_on("r-summarizedexperiment")
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depends_on("r-tximport")
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depends_on("r-jsonlite")
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depends_on("r-matrix")
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depends_on("r-tibble")
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