40 lines
1.7 KiB
Python
40 lines
1.7 KiB
Python
# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack.package import *
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class RVcfr(RPackage):
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"""Manipulate and Visualize VCF Data.
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Facilitates easy manipulation of variant call format (VCF) data. Functions
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are provided to rapidly read from and write to VCF files. Once VCF data is
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read into R a parser function extracts matrices of data. This information
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can then be used for quality control or other purposes. Additional
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functions provide visualization of genomic data. Once processing is
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complete data may be written to a VCF file (*.vcf.gz). It also may be
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converted into other popular R objects (e.g., genlight, DNAbin). VcfR
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provides a link between VCF data and familiar R software."""
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cran = "vcfR"
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maintainers("dorton21")
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version("1.13.0", sha256="743ce845732ada638f0f8a2cd789cd06aa25d818fec87c8bdb998f7c77089ebc")
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version("1.12.0", sha256="dd87ff010365de363864a44ca49887c0fdad0dd18d0d9c66e44e39c2d4581d52")
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depends_on("r@3.0.1:", type=("build", "run"))
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depends_on("r-ape", type=("build", "run"))
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depends_on("r-dplyr", type=("build", "run"))
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depends_on("r-magrittr", type=("build", "run"))
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depends_on("r-memuse", type=("build", "run"))
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depends_on("r-pinfsc50", type=("build", "run"))
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depends_on("r-rcpp", type=("build", "run"))
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depends_on("r-stringr", type=("build", "run"))
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depends_on("r-tibble", type=("build", "run"))
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depends_on("r-vegan", type=("build", "run"))
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depends_on("r-viridislite", type=("build", "run"))
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depends_on("zlib")
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