48 lines
1.5 KiB
Python
48 lines
1.5 KiB
Python
# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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class Blast2go(Package):
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"""Blast2GO is a bioinformatics platform for high-quality functional
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annotation and analysis of genomic datasets."""
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homepage = "https://www.blast2go.com/"
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version('5.2.5', sha256='c37aeda25f96ac0553b52da6b5af3167d50671ddbfb3b39bcb11afe5d0643891')
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depends_on('bash', type='build')
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depends_on('blast-plus', type='run')
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depends_on('java', type='build')
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def url_for_version(self, version):
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fname = 'Blast2GO_unix_{0}.zip'.format(version.underscored)
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return 'http://resources.biobam.com/software/blast2go/nico/%s' % fname
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def install(self, spec, prefix):
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# blast2go install script prompts for the following:
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#
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# continue? [o/c] => o
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# installation prefix => prefix
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# desktop icon [y/n] => n
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# run blast2go? [y/n] => n
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config_input_file = 'spack-config.in'
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config_input_data = [
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'o\n',
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prefix.bin + '\n',
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'n\n',
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'n\n',
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]
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with open(config_input_file, 'w') as f:
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f.writelines(config_input_data)
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with open(config_input_file, 'r') as f:
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bash = which('bash')
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bash('Blast2GO_unix_%s.sh' % self.version.underscored, input=f)
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