53 lines
2.5 KiB
Python
53 lines
2.5 KiB
Python
##############################################################################
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# Copyright (c) 2013-2018, Lawrence Livermore National Security, LLC.
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# Produced at the Lawrence Livermore National Laboratory.
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#
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# This file is part of Spack.
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# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
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# LLNL-CODE-647188
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#
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# For details, see https://github.com/spack/spack
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# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
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#
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# This program is free software; you can redistribute it and/or modify
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# it under the terms of the GNU Lesser General Public License (as
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# published by the Free Software Foundation) version 2.1, February 1999.
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#
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# This program is distributed in the hope that it will be useful, but
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# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
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# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
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# conditions of the GNU Lesser General Public License for more details.
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#
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# You should have received a copy of the GNU Lesser General Public
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# License along with this program; if not, write to the Free Software
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# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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##############################################################################
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from spack import *
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class RYarn(RPackage):
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"""Expedite large RNA-Seq analyses using a combination of previously
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developed tools. YARN is meant to make it easier for the user in
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performing basic mis-annotation quality control, filtering, and
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condition-aware normalization. YARN leverages many Bioconductor tools
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and statistical techniques to account for the large heterogeneity and
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sparsity found in very large RNA-seq experiments."""
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homepage = "https://bioconductor.org/packages/yarn/"
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git = "https://git.bioconductor.org/packages/yarn.git"
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version('1.2.0', commit='28af616ef8c27dcadf6568e276dea8465486a697')
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depends_on('r-biobase', type=('build', 'run'))
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depends_on('r-biomart', type=('build', 'run'))
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depends_on('r-downloader', type=('build', 'run'))
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depends_on('r-edger', type=('build', 'run'))
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depends_on('r-gplots', type=('build', 'run'))
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depends_on('r-limma', type=('build', 'run'))
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depends_on('r-matrixstats', type=('build', 'run'))
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depends_on('r-preprocesscore', type=('build', 'run'))
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depends_on('r-readr', type=('build', 'run'))
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depends_on('r-rcolorbrewer', type=('build', 'run'))
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depends_on('r-quantro', type=('build', 'run'))
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depends_on('r@3.4.0:3.4.9', when='@1.2.0')
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