e41ac9af8a
* sonLib package as required by the HAL toolkit * cleanup * Update var/spack/repos/builtin/packages/sonlib/package.py Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/sonlib/package.py Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
48 lines
1.4 KiB
Python
48 lines
1.4 KiB
Python
# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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import os
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class Sonlib(MakefilePackage):
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"""sonLib is a compact C/Python library for
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sequence analysis in bioinformatics."""
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# This is sonlib as needed by the hal package which expects
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# a side by side compilation
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#
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# If you need to use sonlib then you want py-sonlib
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homepage = "https://github.com/ComparativeGenomicsToolkit"
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url = "https://github.com/ComparativeGenomicsToolkit/sonLib"
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git = "https://github.com/ComparativeGenomicsToolkit/sonLib.git"
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version('master', branch='master')
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version('2020-04-01', commit='7ebe2ede05a6ee366d93a7a993db69a99943a68f')
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def setup_build_environment(self, env):
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binpath = os.path.join(self.stage.source_path, 'bin')
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libpath = os.path.join(self.stage.source_path, 'lib')
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env.set('BINDIR', binpath)
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env.set('LIBDIR', libpath)
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def build(self, spec, prefix):
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binpath = os.path.join(self.stage.source_path, 'bin')
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libpath = os.path.join(self.stage.source_path, 'lib')
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mkdir(binpath)
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mkdir(libpath)
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make()
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def install(self, spec, prefix):
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install_tree('bin', prefix.bin)
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install_tree('lib', prefix.lib)
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