33 lines
1.4 KiB
Python
33 lines
1.4 KiB
Python
# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other
|
|
# Spack Project Developers. See the top-level COPYRIGHT file for details.
|
|
#
|
|
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
|
|
|
|
from spack import *
|
|
|
|
|
|
class RCondop(RPackage):
|
|
"""CONDOP: Condition-Dependent Operon Predictions.
|
|
|
|
An implementation of the computational strategy for the comprehensive
|
|
analysis of condition-dependent operon maps in prokaryotes proposed by
|
|
Fortino et al. (2014) <doi:10.1186/1471-2105-15-145>. It uses RNA-seq
|
|
transcriptome profiles to improve prokaryotic operon map inference."""
|
|
|
|
homepage = "https://cloud.r-project.org/package=CONDOP"
|
|
url = "https://cloud.r-project.org/src/contrib/CONDOP_1.0.tar.gz"
|
|
list_url = "https://cloud.r-project.org/src/contrib/Archive/CONDOP"
|
|
|
|
version('1.0', sha256='3a855880f5c6b33f949c7e6de53c8e014b4d72b7024a93878b344d3e52b5296a')
|
|
|
|
depends_on('r-mclust', type=('build', 'run'))
|
|
depends_on('r-earth', type=('build', 'run'))
|
|
depends_on('r-plyr', type=('build', 'run'))
|
|
depends_on('r-seqinr', type=('build', 'run'))
|
|
depends_on('r-randomforest', type=('build', 'run'))
|
|
depends_on('r-rminer', type=('build', 'run'))
|
|
depends_on('r-genomicranges', type=('build', 'run'))
|
|
depends_on('r-genomeinfodb', type=('build', 'run'))
|
|
depends_on('r-s4vectors', type=('build', 'run'))
|
|
depends_on('r-iranges', type=('build', 'run'))
|