a8ccb8e116
- [x] add `concretize.lp`, `spack.yaml`, etc. to licensed files
- [x] update all licensed files to say 2013-2021 using
`spack license update-copyright-year`
- [x] appease mypy with some additions to package.py that needed
for oneapi.py
39 lines
1.1 KiB
Python
39 lines
1.1 KiB
Python
# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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class Tcoffee(MakefilePackage):
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"""T-Coffee is a multiple sequence alignment program."""
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homepage = "http://www.tcoffee.org/"
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git = "https://github.com/cbcrg/tcoffee.git"
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version('2017-08-17', commit='f389b558e91d0f82e7db934d9a79ce285f853a71')
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depends_on('perl', type=('build', 'run'))
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depends_on('blast-plus')
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depends_on('dialign-tx')
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depends_on('viennarna')
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depends_on('clustalw')
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depends_on('tmalign')
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depends_on('muscle')
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depends_on('mafft')
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depends_on('pcma')
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depends_on('poamsa')
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depends_on('probconsrna')
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build_directory = 'compile'
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def build(self, spec, prefix):
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with working_dir(self.build_directory):
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make('t_coffee')
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def install(self, spec, prefix):
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mkdirp(prefix.bin)
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with working_dir(self.build_directory):
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install('t_coffee', prefix.bin)
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