30 lines
1.2 KiB
Python
30 lines
1.2 KiB
Python
# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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class Denovogear(CMakePackage):
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"""DeNovoGear is a software package to detect de novo mutations using
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next-generation sequencing data. It supports the analysis of many
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differential experimental designs and uses advanced statistical models
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to reduce the false positve rate."""
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homepage = "https://github.com/denovogear/denovogear"
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url = "https://github.com/denovogear/denovogear/archive/v1.1.1.tar.gz"
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version('1.1.1', sha256='799fe99193e9cf12320893cf020a3251022f60a49de8677a1c5a18c578fe4be2')
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version('1.1.0', sha256='f818f80cd67183294c8aae312cad8311e6a9abede1f687567bb079d29f79c005')
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depends_on('cmake@3.1:', type=('build'))
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depends_on('boost@1.47:1.60', type=('build'))
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depends_on('htslib@1.2:', type=('build'))
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depends_on('eigen', type=('build'))
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depends_on('zlib', type=('link'))
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patch('stream-open.patch', when='@:1.1.1')
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# fix: ordered comparison between pointer and zero.
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patch('newmat6.cpp.patch')
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