52 lines
2.8 KiB
Python
52 lines
2.8 KiB
Python
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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class RHdf5array(RPackage):
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"""HDF5 backend for DelayedArray objects.
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Implements the HDF5Array and TENxMatrix classes, 2 convenient and
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memory-efficient array-like containers for on-disk representation of
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HDF5 datasets. HDF5Array is for datasets that use the conventional (i.e.
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dense) HDF5 representation. TENxMatrix is for datasets that use the
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HDF5-based sparse matrix representation from 10x Genomics (e.g. the 1.3
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Million Brain Cell Dataset). Both containers being DelayedArray
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extensions, they support all operations supported by DelayedArray
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objects. These operations can be either delayed or block-processed."""
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bioc = "HDF5Array"
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version('1.22.1', commit='b3f091fbc159609e8e0792d2bf9fbef52c6ceede')
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version('1.18.0', commit='d5bd55d170cb384fdebdf60751e1e28483782caa')
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version('1.12.3', commit='21c6077f3f789748a18f2e579110576c5522e975')
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version('1.10.1', commit='0b8ae1dfb56e4203dd8e14781850370df46a5e2c')
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version('1.8.1', commit='3c9aa23d117bf489b6341708dc80c943bd1af11a')
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version('1.6.0', commit='95f2f8d3648143abe9dc77c76340c5edf4114c82')
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version('1.4.8', commit='79ab96d123c8da8f8ead81f678fe714c0958ff45')
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depends_on('r@3.4:', type=('build', 'run'))
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depends_on('r-delayedarray@0.2.4:', type=('build', 'run'))
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depends_on('r-delayedarray@0.3.18:', type=('build', 'run'), when='@1.6.0:')
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depends_on('r-delayedarray@0.5.32:', type=('build', 'run'), when='@1.8.1:')
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depends_on('r-delayedarray@0.7.41:', type=('build', 'run'), when='@1.10.1:')
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depends_on('r-delayedarray@0.9.3:', type=('build', 'run'), when='@1.12.3:')
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depends_on('r-delayedarray@0.15.16:', type=('build', 'run'), when='@1.18.0:')
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depends_on('r-rhdf5', type=('build', 'run'))
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depends_on('r-rhdf5@2.25.6:', type=('build', 'run'), when='@1.10.1:')
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depends_on('r-rhdf5@2.31.6:', type=('build', 'run'), when='@1.18.0:')
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depends_on('r-matrix', type=('build', 'run'), when='@1.18.0:')
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depends_on('r-rhdf5filters', type=('build', 'run'), when='@1.22.1:')
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depends_on('r-biocgenerics', type=('build', 'run'))
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depends_on('r-biocgenerics@0.25.1:', type=('build', 'run'), when='@1.8.1:')
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depends_on('r-biocgenerics@0.31.5:', type=('build', 'run'), when='@1.18.0:')
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depends_on('r-s4vectors', type=('build', 'run'))
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depends_on('r-s4vectors@0.21.6:', type=('build', 'run'), when='@1.12.3:')
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depends_on('r-s4vectors@0.27.13:', type=('build', 'run'), when='@1.18.0:')
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depends_on('r-iranges', type=('build', 'run'))
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depends_on('r-rhdf5lib', type=('build', 'run'), when='@1.12.3:')
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depends_on('gmake', type='build')
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